CI01000012_02551954_02557017 (GOT1)


Basic Information

Item Value
gene id CI01000012_02551954_02557017
gene name GOT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 2551954 ~ 2557017 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_02551954_02557017.mRNA
ATGTCGATATTTAGTGAAGTCCCGCAGGCTGCTCCTGTCGCAGTGTTTAAACTGACAGCGGATTTCCGTGAAGATCAGTGTTCCAGCAAGGTGAATCTGGGAGTCGGAGCCTACAGGACAGATGAATGTCAGCCCTGGGTTCTCCCCGTGGTGAGAAAAGTGGAGAAGATGATCGCTGATGACCATAGCTTGAACCACGAGTACCTGCCCATCTTAGGCCTGCCAGAGTTTCGTTCCAGTGCATCTAGGATCGCTCTGGGTGAAGACAGTCCTGCCATCAAGGACAACCGGGTAGGAGCTGTGCAATGTTTGGGAGGTACTGGTGCTCTAAAGATCGGAGCGGAGTTTCTTCGCCGTTGGTACAATGGAACTGACAACACAAAAACTCCAGTTTATGTGTCTGCACCCACATGGGAAAACCACAATGCCGTTTTCTCTAATGCTGGATTTGAGGACATCCGTCCATACAAATATTGGGATGCAGGGAAGCGTGGACTCGATTTGGCAGGTTTTCTGGGTGACCTGGAGAACGCACCTGATCACTCCATCTTTGTACTGCATGCCTGCGCTCACAACCCCACCGGTACAGACCCCACCCAGGACCAGTGGAAGCAGATCGCTGATGTCATGAAG

Function

symbol description
got1 Predicted to enable L-aspartate:2-oxoglutarate aminotransferase activity. Predicted to be involved in aspartate biosynthetic process. Predicted to act upstream of or within biosynthetic process and cellular amino acid metabolic process. Predicted to be active in cytosol. Is expressed in retina. Human ortholog(s) of this gene implicated in amyloidosis; amyotrophic lateral sclerosis; pancreatic ductal adenocarcinoma; and transient cerebral ischemia. Orthologous to human GOT1 (glutamic-oxaloacetic transaminase 1).

GO:

id name namespace
GO:0008483 transaminase activity molecular_function

KEGG:

id description
K14454 GOT1; aspartate aminotransferase, cytoplasmic

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_02551954_02557017.mRNA True 633 mRNA 0.52 5 2551954 2557017

Neighbor

gene id symbol gene type direction distance location
CI01000012_02549682_02550094 GOT1, GOT1.S coding downstream 1860 2549671 ~ 2550094 (-)
CI01000012_02413852_02502617 HPSE2 coding downstream 49337 2413852 ~ 2502617 (-)
CI01000012_02395816_02404347 HPS1 coding downstream 147607 2395557 ~ 2404347 (-)
CI01000012_02381631_02386668 NA coding downstream 165286 2381348 ~ 2386668 (-)
CI01000012_02357517_02361973 NKX1-2, NKX1.2LA coding downstream 189981 2357124 ~ 2361973 (-)
CI01000012_02614955_02631276 SLC25A28 coding upstream 57852 2614869 ~ 2632445 (-)
CI01000012_02813455_02824934 GOLGA7BA, GOLGA7B coding upstream 256346 2813363 ~ 2824934 (-)
CI01000012_02967143_02967496 NA coding upstream 408653 2965670 ~ 2968315 (-)
CI01000012_03172201_03172736 MARVELD1 coding upstream 614615 3171632 ~ 3172736 (-)
CI01000012_03280454_03281289 NA coding upstream 722854 3279871 ~ 3281289 (-)
G70664 NA non-coding downstream 47022 2504706 ~ 2504932 (-)
G70543 NA non-coding downstream 319678 2232039 ~ 2232276 (-)
G70538 NA non-coding downstream 341320 2210342 ~ 2210634 (-)
G70522 NA non-coding downstream 378734 2172939 ~ 2173220 (-)
G70477 NA non-coding downstream 436227 2115231 ~ 2115727 (-)
G70687 NA non-coding upstream 28479 2585496 ~ 2586108 (-)
G70690 NA non-coding upstream 30443 2587460 ~ 2587689 (-)
G70728 NA non-coding upstream 120854 2677871 ~ 2678081 (-)
G70704 NA non-coding upstream 246467 2803484 ~ 2840043 (-)
G70762 NA non-coding upstream 294497 2851514 ~ 2851723 (-)
G69562 NA other downstream 1175656 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 1400756 1135676 ~ 1192154 (-)
G69332 NA other downstream 1776075 775364 ~ 775879 (-)
G69277 NA other downstream 1821489 729920 ~ 730465 (-)
G69161 NA other downstream 1963939 587604 ~ 588015 (-)
G70774 NA other upstream 309491 2866508 ~ 2866892 (-)
G71898 NA other upstream 1976513 4533530 ~ 4534672 (-)
G72068 NA other upstream 2219203 4776220 ~ 4780132 (-)
G72204 NA other upstream 2736756 5293773 ~ 5302206 (-)
CI01000012_05414096_05416676 TTC9 other upstream 2806625 5413369 ~ 5416780 (-)

Expression


Co-expression Network