sars (sars,LOC107671868,LOC107697960)


Basic Information

Item Value
gene id sars
gene name sars,LOC107671868,LOC107697960
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 17601124 ~ 17627589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232562.3
GGTcggtttgggacacagccgcaCACTTGCGCTTCACTGCAGCGCGGCCGGTCCACACGCTCCCTGCCCGCTCAGCCGCTCAGCAGCGTTACTGTATCAGTGATCATCGGCATCATGGTGCTGGACCTGGACCTGTTTCGGAAGGACAAGGGCGGAGATCCGGAGATAGTGAGGGAAACGCAGAGGAAGCGGTTTAAAGATGTGGCGCTGGTGGATAACCTGGTTCAGGCGGATTCGGAGTGGAGGAAGTGTCGTTTCACCGCTGATAATCTCAACAAGGCAAAGAACTTATGCAGCAAGGCTATTGGAGAGAAAATGAAGAAGAAGGAGCCAGTTGGTGACGATGAGACTCTTCCAGACGATGCCCAGAACTTGGAAGCTCTCACAGCAGAGACGTTATCGGCTCTGACAGTGACTCAGATTAAGAAGGTCCGGCTGTTGGTGGATGAAGCTATTCAGAAATCAGACAGCGAGCGGCTgaagctggaggcagagcgcTTTGAGTACCAGCGGGAGATCGGCAATCTCCTGCACCCCTCTGTTCCCATTAGCAATGATGAGGACGCCGACAATAAGGTGGAGCGCACCTGGGGCGACTGCACAGCGCAGAAGAAGTACTCTCATGTGGACCTGGTCGTCATGGTTGATGGATATGAAGGAGAGAAGGGGGCGATTGTCGCTGGGAGCCGAGGATATTTCCTGAAGgGGCCTCTGGTTTTCCTGGAGCAGGCCTTGATTAACTATGCCCTGCGGATCCTCTACAGGAAGAACTACAATGTCCTTTACACCCCCTTCTTCATGCGGAAAGAGGTCATGCAGGAGGTCGCGCAGCTCAGCCAGTTTGATGAGGAGTTGTATAAGGTGATTGGGAAAGGTAGTGAGAAGTCTGATGATAACTCAGTGGACGAGAAGTATTTGATCGCCACTTCCGAGCAGCCAATCGCAGCCTTCCTGAGAGATGAGTGGCTAAAGCCGGAGGATCTCCCCATCCGCTACGCTGGCCTCTCGACCTGCTTCAGACAGGAAGTGGGTTCCCATGGCCGAGACACTCGCGGCATTTTCAGAGTTCACCAGTTTGAGAAAATTGAGCAGTTCGTGTACTCCTCCCCTCATGACAACAAATCATGGGAGATGTTTGATGAGATGATCGGAACAGCAGAGGAATTTTACCAAACACTCGGAATTCCCTACCGCATCGTCAACATCGTCTCCGGTGCTCTGAACCACGCAGCCAGCAAGAAGCTGGATCTCGAGGCGTGGTTCCCTGGATCCCAGGCCTTTAGAGAGCTGGTGTCCTGCTCCAACTGCACAGATTATCAAGCTCGCCGCCTGCGCATCCGCTACGGCCAGactaaaaaaatgatggacaagGCTGAGTTTGTACACATGCTCAATGCAACCATGTGTGCCACCACCCGAGTAATATGTGCCATCCTGGAAAATTTCCAGACAGACGAGGGCGTAGTCATTCCAGAGCCGCTCAGGGACTTTATGCCTCCAGGCTTAACAGAAATCATCAAGTTTGTGAAGCCCGCTCCTATTGACCAAGAGCAGTCCAAAAAGCAGAAGAAACAGCAGGACGgagggaagaagaagaagaagcagaacgCCGAGGATTCTGACCTTCAAACCCAAGTAGAGAACATGTCGGTCAACTCCTAGATTTTACACTTCCACACGTCCTGCCAGTCACCGCCGTCTTCATCTCATTAAACTATTACCGTTTTATCCATCATCTTCACTTCTGGTGAAAATCGGAATCTTCTGCAGGTTCTGTTCCGGGTTTCAGGGACGGCTTTAAAAGACCTGAGGAGGGAAAGTTCTGTCCTGTTAACATTTCCGTGTTCAGTATAGGTCATGCAGTTTGTGaacatacatatttaaaatttagGTTTAAGTACATAATAAAGGGAACATGGGTATAAACACTGTAATCCGTATGGTAATGGTGTAGTAATACTTTGGTATGTTGCTGCTCTTGAGCTTCTATTAAAGGAATTCaaatttaatgattaataatctgAAAATCTTCAACTTCTCTGAAGCATGGTCTAGAAAATGAAGTCACAGAGCCTAAAATCAACTTTAATGGGTAAGAATTACCTTCTTCAATGCTGCAACTTTGGTTGTGGGTGGcaaatttcatttaaaacaacCTGTCTGCCTTGAATTAGCTCCCTCTGAAGAGTttctcatcttcatcttcatcattgTCACTTAGATGTCACGGCTGAAGAATGATCTCATCACTTATGTCAACAGCAATGAAGGCCTCTGTACAGTACATTAAGAGATAATGGTGGCATatgagaataaataaatatgtaaacacA

Function

symbol description
sars Predicted to enable several functions, including nucleic acid binding activity; protein homodimerization activity; and serine-tRNA ligase activity. Predicted to be involved in negative regulation of angiogenesis; negative regulation of macromolecule metabolic process; and seryl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; egg cylinder; and genitourinary system. Human ortholog(s) of this gene implicated in intellectual disability. Orthologous to human SARS1 (seryl-tRNA synthetase 1).

NR:

description
serine--tRNA ligase, cytoplasmic

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232562.3 True 2333 mRNA 0.48 11 17601124 17627589

Neighbor

gene id symbol gene type direction distance location
LOC103023305 NA coding upstream 11399 17564407 ~ 17589725 (+)
fam50a fam50a coding upstream 39108 17543782 ~ 17562016 (+)
LOC103046182 NA coding upstream 97060 17498763 ~ 17504064 (+)
cs cs,LOC107707042,LOC107697968,LOC107671863 coding upstream 114125 17471482 ~ 17486999 (+)
LOC103024256 LOC108425513,LOC107671862,LOC107697970,LOC107756420 coding upstream 140291 17376371 ~ 17460833 (+)
LOC103044854 LOC103044854,LOC108425484 coding downstream 3182 17630771 ~ 17732521 (+)
LOC103026658 LOC108425505,LOC107715025,LOC107671876,LOC106572368,LOC105022778 coding downstream 176494 17804083 ~ 18021997 (+)
wdr63 NA coding downstream 450061 18077650 ~ 18125936 (+)
LOC111194038 NA coding downstream 586296 18213885 ~ 18214673 (+)
cyr61 cyr61,cef10 coding downstream 735126 18362715 ~ 18365465 (+)
G132588 NA non-coding upstream 132910 17466270 ~ 17468214 (+)
G132586 NA non-coding upstream 225462 17372066 ~ 17375662 (+)
G132585 NA non-coding upstream 236992 17362582 ~ 17364132 (+)
G132547 NA non-coding upstream 376469 17222902 ~ 17224655 (+)
G132550 NA non-coding upstream 412640 17187875 ~ 17188484 (+)
G132718 NA non-coding downstream 101728 17729317 ~ 17734305 (+)
G132741 NA non-coding downstream 117372 17744961 ~ 17746840 (+)
G132750 NA non-coding downstream 143765 17771354 ~ 17771564 (+)
G132752 NA non-coding downstream 146146 17773735 ~ 17773996 (+)
G132767 NA non-coding downstream 273684 17901273 ~ 17902022 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 76771 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 91309 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 1863343 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 2135039 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 2203555 15364390 ~ 15397569 (+)
G133076 NA other downstream 1415905 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 1719879 19347468 ~ 19360891 (+)
G133246 NA other downstream 2495801 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 2665574 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 3139327 20766916 ~ 20783861 (+)

Expression


Co-expression Network