CI01000012_03292460_03316923 (TARBP1)


Basic Information

Item Value
gene id CI01000012_03292460_03316923
gene name TARBP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 3292160 ~ 3316923 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_03292460_03316923.mRNA
ATGTCTAATTTTTTGATAAAAACCCTATTGTCCCATTATCCCGATCCGGAGAATTTAATCAATAATTTGTGCTGGCCAAGCACATCACGCCCCGATATAGAGAAGATTGAAGCTATAACTGTTTTGATCAAGGAGCTTTCCAATAAATCACAAGAGGAGCGCTTTATTAGTAAGGTGCGGTCAGTTATATGGGATCAATGCATGCCACTACTGCAAATGATCTCCAGTGCAGATGATGGAGGTAAGGATCTGCTCAGCGCTGCCTGTGGACTCTTTGCAGTGTGTGTCAGTGTCTGTCAGGCTGATGATGTACCTGGGCAGGTAATTCATGTTCTTCTGCAAGTGCTGGTGACGAGAGATTATGGCAACAATGAAACCGGTAGGTTTGACGTAGATGTTGCCATTGAAGTCACAGCAGTGCTGTTGTCTAGCATCTCATACGACGGAGACATCATCTCCAGGACTCTATCCTGCACCCTTTCCTGTGTCAAAGATCTTTCTGACTCCATCATTTCAAAAATCATAGTACGGATCTGGTTCACCATACTCAAGTCCTGCAATAAAGAAGCTGAATCAGAGGTTCTGCATCAGATATGGGAAGATTTGCTGTCATGGCATCAGAGAGATCAGACAGAATCAGTGTCAGCTCGGGTTCTGTTGTGTCTCACTGCACTCTCTGACCACCTCTACTCTTTGGAAACCTCTCAGAACCGACCGGACCCTAGAAGATCTCAAAGGTTTTTTAGGGCAATTCAGGCCGGATTGACTCACAAGGACAGTGTGACCCGCAAACGGGCTCTTTACCTGCTCACCAGGTGTGTGGCACTGGCAGAGATCAAGAAAGAAGATGTGTTTACCAGCGAGGAACCTCACACAGATGAAATCCTGTTCAGATGGACACCAGAAAAACAGCAGTTACTGAGAGAATTCTGGGAAGATTTTGCTCTAGTGTTAGAGACTCTAGAGGAGAACCAGATTCACGTGATTCGACCGGTACTCAACAGGATTGATATGCTTGTTGAGACAACGGCAACTGATATTCAAGGTGGGCTGTTTTCTCCATCCTGGCTGCTGTGTGTGTACCAGCGCATGTTTCACAGTGAGAACAAGGCAGTAATGAAAGAAGGAGTCAATCACCTGTTAGAGCTGAAAGCACTCCATCGTTCTGCGTTTGCTTTGGCATTCTCACAGTTTGTAATCGGCCCTCTCATGGATGTTCTTGCAGAGAGCTCCCTCTATCACAGGGCACTACAGCAGAACATCAGAGATTGTCCAGAGCTGGGAGTGAAACTCCAAATCTTTATGGTGAATTTCTTCAGCAGTTTGCCAGAAGAGAACAGAGGTTCCGTGTTGCTGCAGCTCATTCAGCGGTTGGGTTCACGGCAGTGGTGCGCAGTCCCACTGCTCTTTCTGTCCCAGGCCCTGTCCTGTCTGTCCCCTTGTCCTTTACTAGGATCTGATGGACTCAATGCGTTCAGAGAAGTTTTGCGCTGTACTATGATCACTCACCAAGTTCTTTTGAGAGGAGCTTCACAGTGTTTTCTGCTCCATGCCGCTCTCTGCCTGACAGACGTGACAACGGTGTCTCTAGATGAGATATTTGGTTTCCTTGTACATTTTCGAGCTGATGAGTCTCTATGTCGGGGTACAGCACTGTGGAAAGAGCTGTGTAATTGGCTCCAGACTAATGAAGGCCGTTTTCGTTTGACTGATGGCGATTTAGGCTCCTCTGTTGAGCTTCGCACTGCAACTTCAAACAGTAAAGGAGCCTCTATATTCAGCTACGTCCAGCAGCGACTGAAGACCTTCCTCACAGTTCCAGCCAACACAGATCAGACAGGAAGTCTACCTGATCCAGGTGAGGCTGAGCTGCTGGCGCGGACAATGCTGCTTACAGCAGACCTGCAGCAGACCAGGAGTGAGGAACCTGGTCTAGAACTGCTTCTCCAGCCCCTACTGGACGTCTTACGGAGACTTAGCACTAACGTCTATCTGGTGCTGCACAAGACGGACAAGAGCCTGCAGCTACTGCTGCGCTTACTGCAGCTGCATCGCAGACACTCGGATACAGAGAAGGAGAATGAAGATGTTGTGGCTGTCACTTTGAAGATGCACATGCTGTCGGTGGTGGATTCTGTGCAGGAGTTTCTGCTGAGGAGGTTGAGTGGGGAACTGAGGGAGTTATGTGATGTGGAGAGGTCTGAACTTTATCTCTCAGTATTAAGAGAGCTGGTTCTTACTTACTCCACTGTTTCGTGGTATGGTTCAAATCTGCAGCAAAACTACATCCCAAAACTCACCACTCACTGCTTGAGGATCCTCAATGAACCTTCTGAACAGGTGGAGCACTCAACCCAGAATCCCTCTGTGTCAGGGCAGGTTCAGAGAGTGGTCAGTATGGCCACACTTGCGCTGTTGTGTGACATGGCTGATCGAGGTGTCCTGAAGTCCCAGTCTGAGGCCATGAGATCACTTCACTCGCTAACCAACTATTTCTACCCTTCATCATCATCTCAGCATCTCAACCAGACATTACTGAAGCCCACAACTGCGACAGTCAGTCATCCAGAGGATGGTCTCTTGCTGAAGGACTGGGGACGAATTGTGGCCCAGTTTATTGGAAATCAGTGGATGTGTCTGAGTTTCCTGCAGAAGACTGCTGGGACCCTTCGGGCTCCTGAAGCTCCTGAGGTCCTGAGGGCTGCGGTGGATGCTTTGGCATTATTGCCTGGCCATCTCGTTCTGCCGGTGCTGGACTTCATGGCATCAGTCTTACCACAGGTGGTGCAGTGTGAAGAATCTCTGTGCGTTGAGGCCATATGTGCCTCATGGAAGGTGGTTCAGGCTCTGAGCACAAACCCTCATGACTTCTGGTCCACACTGCAGGGATTCGTGCGCTTAGCTTTTAACCAGGGGCTTTTGCAGCTCACAGAGGAACAGAACCCCAGAATCACGGCCTGCATACAACAGATTGTGAGTGAGCTCATGGAGTTGGCTCAGGTCCGATCAGGGGTGTTTAATGTTCTGATCCAGCATTGTTGTGAGACGTGGCTTCCATATGGGGCAGCAGAGGGTGTTCAGTCAGACGCTGTGTTCAGTACGGCTCTCCTACACCTCAACATCCTGACTGAGGCGTGTGTGTACGGCCCAGTGTTCAGAAGAGACCAAAGGCTTGTTCAGGAGGTTCAAAGCTATGTTGAGCAACTTGGTGATACTTGTGCAGCAAACACAGCTGTCAGCAGTGATAACAGAGACGATCAGTTTCCTCGAGTGTGTGCTTTGGCTTTTCTCTGCCGCTTGAATCCATCTAATCGTCTTCACCAGCGCCTGATGGAAGAGCTTGTGCAACGACTACTGAGGAAGGATGCCGAGATCTCAAAATCCAAAGTACGTTACTATAGCAACTCCATCCAGCACAGAGTGAAGAACCGCGTGTGGCAGACGCTGCTGCTGCTACTGCATAAACTCAGACCGGAGTTTGTGTCGGACTGTGTGTTGAGTCACGTGTGTGAGGCCGGGTTCTGCAGTAACCAAGCATCCGTCAAGTACCTGATCGAATGGGCCCTGATCCTGATCCTCCATCAGAACCCGTCTCACATCCAGAACCTGTGGAACTGTTTCAGCCTGGATCATGAGAAGACAAAAACAAGCATTCGCACTTTTCTCTCTGTCCTCATGCACATGAACGTCCTCCTCCCAAAACTGCAAGATAAGGAGGTACAGTGGCGTAGAGCAGTGGAGTTGAGCCTGCAGTGGTGTTTCAGTCATAACTTCAGCGTCCGTCTGTATGCCCTGCTCGCCCTTAAGAGGGTGTGGGAGCTGGAGGACGCCCGTGTCCACACGGAGGAAAATCTGGGCGGGCTGACCACAGTTGTCCAAGCTTGTTTACAACAGGCTGAAGCCATGCAGAACACCGGGGATTACAGTGTTGAGACAATATTCCAGACCTTTCCCAGCCTCTCAGAGTTGGCAGAAGATGAGTGGATTCCACTGTGGAAATTTGAGAGTTTTGTTGTCTTCCCGATATGCACTGCCCTGCCATTGAAGAACCATGCGAGTGATCTTGGTGAACTCCAGCCTAGTGACTGGATCCAGCAGGACAAAGGTGATTTGGAGCAGGAAGAGCGCTGGGCAGAAGTTCAGAAGAAAATCACCCCGTGGAAGCTGAGTGTCCAGGAGCAGGAGCCTGAGCTCATTGCCCAGCAGAGGGCAGTACGCCTGGGCAAACTCACCAGCAGCCTCCTGGTGGTCGCATCGCTCATAGACAAGCCCACCAATCTGGGCGGCCTGTGCAGGACGTGTGAGATCTTTGGGGCTAAAGCTCTGGTTCTGGACAGTTTGCGACACATTAATGATAAACAGTTCCAGGCGCTCAGTGTGTCTTCAGAGTTGTGGCTGCCAATGGTTGAGGTGAAGCCTGCAGAGTTGTCAGATTACCTGCAGCTGAAGAAGAGAGAGGGATACTGGGTAATAGGTGTAGAGCAAACATCCAACAGCCAGAGTTTACAAGATTACACTTTTCCTGAGAGAAGCCTTCTTTTACTCGGTAATGAAAGGGAAGGCATTCCTGCAAACCTGCTGCAGCTGGTGGATGTGTGTGTGGAGATTCCTCAGCACGGTGTTACCCGCTCCCTCAACGTGCACGTGAGCGCCGCCCTGCTGGTGTGGGAATATACACGCCAGCATTTAGGACAAAACCCCGCAGCCCCTCTGTGCTGAATTTACGGAGCAGTCTTCTGTGTTTTAGCAGAAAACATCTGTCAGGATTTGGAAGATGTTGCATTTTACACCATTTTGACAAGACTCCCCAAATTTTATTAGGATGTTGGAAAACCGTTTCATTCATGTTTAAATATGGCATCTATCCACACTACCATCTGCTGTTCCTTTTCCTTCCCTTTGAGTTCTTTTATTTTTCACTCTGTATTGACATTTAAATGTGATGTTTGATGAATTTGTGTTTTATCTTGTATTTTAAGATAAATATTTTAATATTGCTTTGAATTTAGGTTAAATAAA

Function

symbol description
tarbp1 Predicted to enable tRNA (guanine) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to be located in nucleus.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0008173 RNA methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_03292460_03316923.mRNA True 5019 mRNA 0.49 29 3292160 3316923

Neighbor

gene id symbol gene type direction distance location
CI01000012_03284445_03291645 NA coding downstream 515 3284345 ~ 3291645 (-)
CI01000012_03280454_03281289 NA coding downstream 10871 3279871 ~ 3281289 (-)
CI01000012_03172201_03172736 MARVELD1 coding downstream 119424 3171632 ~ 3172736 (-)
CI01000012_02967143_02967496 NA coding downstream 323845 2965670 ~ 2968315 (-)
CI01000012_02813455_02824934 GOLGA7BA, GOLGA7B coding downstream 467226 2813363 ~ 2824934 (-)
CI01000012_03327683_03341200 NA coding upstream 10709 3327632 ~ 3341200 (-)
CI01000012_03357081_03369647 FAM135A coding upstream 40158 3357081 ~ 3369647 (-)
CI01000012_03437950_03468790 NA coding upstream 120866 3437789 ~ 3468853 (-)
CI01000012_03595690_03618511 NA coding upstream 278609 3595532 ~ 3618511 (-)
CI01000012_03717828_03724221 NA coding upstream 400537 3717460 ~ 3725744 (-)
G70916 NA non-coding downstream 55520 3231699 ~ 3236640 (-)
G70833 NA non-coding downstream 177065 2944011 ~ 3115095 (-)
G70868 NA non-coding downstream 270288 3021337 ~ 3021872 (-)
G70818 NA non-coding downstream 363074 2928500 ~ 2929086 (-)
G70808 NA non-coding downstream 364247 2927665 ~ 2927913 (-)
G70956 NA non-coding upstream 68383 3385306 ~ 3385513 (-)
G70814 NA non-coding upstream 180112 3497035 ~ 3504550 (-)
G70813 NA non-coding upstream 213686 3530609 ~ 3545040 (-)
G71717 NA non-coding upstream 345700 3662623 ~ 3663090 (-)
G71699 NA non-coding upstream 406204 3723127 ~ 3743099 (-)
G70774 NA other downstream 425268 2866508 ~ 2866892 (-)
G69562 NA other downstream 1915862 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 2140962 1135676 ~ 1192154 (-)
G69332 NA other downstream 2516281 775364 ~ 775879 (-)
G69277 NA other downstream 2561695 729920 ~ 730465 (-)
G71898 NA other upstream 1216607 4533530 ~ 4534672 (-)
G72068 NA other upstream 1459297 4776220 ~ 4780132 (-)
G72204 NA other upstream 1976850 5293773 ~ 5302206 (-)
CI01000012_05414096_05416676 TTC9 other upstream 2046719 5413369 ~ 5416780 (-)
G72294 NA other upstream 2145917 5462840 ~ 5465857 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001943 tarbp1 coding CM030143.1 CM030143.1 20347992 ~ 20362451 (-)