CI01000012_03595690_03618511


Basic Information

Item Value
gene id CI01000012_03595690_03618511
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 3595532 ~ 3618511 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_03595690_03618511.mRNA
GAATATCAAAAAGAAGCAATCAGTCATCATACAGACAGTAACAAGTGGTGTTGGGTTACCCAGAAGAGCATCAAAGAGTTGTAAAAGTGACGTTGCTTCTATTTCTAGGTTTTCAAGGAGCCCTTTCTCATGTGCCAAAGACGACATGATTCACTATCTCAGATGGACTGTTTTCCTGTGGATCGTAAATACCATTCCTTTTACTTCGGGAATGGCAGTGAATGAGAGAATAGGTATGTATGCTGTCACCAAGATGTTTGCTTATTCTTGTCAGTTTACAAAAGATCATACATGTCCACCCTTAAAGCTGGAGGAGATATGGCATACCAGTGTGAACATTCACAGAGAATTCACAGGATTCGATTTAGCCGAGAAGTTCCTTCTCAGAAAAGGCATTGTGACGGATGACAGGCTGTTGTTTAGACTGGGGAATAAACCCCTGTTTAAACCAACAGAATCTGTGTTCCCAAATGGACTTCCTCATGAATACTCCATTATTGCCACGTTCCGGCTCAGAAAAACCACAAAGAAAGATCGCTGGTTTGTTCTGCAGATCTTTGATAAAAGTGGAGATACACAGGTGTCATTAATAGTGGATGGGGCTAAAAAAACAGTAGAGTTTTTAGCTCAGGGTTTTCTGAAGAACAGCCTCCTGTACACCTTCAAGAACCGAGACCTGCACGCCCTCTTCGATCGACAGTTTCACAAGCTGGGTGTTTCTGTCGAGAGCAACGCCGTCTCCATCTACCTGGACTGCAAATTAATTGAACGTCAGGTGACTGCTGAAAGGTCTGGCATGGAAGTCAGCGGACGCACCTTCATCACCACTCGAGTGGAGGATGGACGTCCAGTGGATATTGAGCTTCAAGAGATTCTGATCTTCTGTGACGCTAGAATAGCTGACCTGGACAGATGCTGCGATTCTCCTGGAGTTACGTGTGAACCTGTAGTAACCCACAACCCCACAGCGGCCCCACTGGTCACAGGATACCTCCACAGAATGCTGTCCATGCCAGCTCAGCTCCCCACCGACCGATGCCACTGTCCCGCTCTGAAGGGGGATCAAGGGCTTCCGGTTTTGGCAGGACATTCTGGACAAAAGGGAGATAAAGGAGACATGTACATGTTACTAAAGATGCTTTATGACAGTTTTCTTGTCATTATTATAACATTTGTGGTACACTTTAGTTCATTAGGTTTTATCGGAAGTTATTATTATCCCAACATATTTAAAGTGATTTTTGGCTTCTCTAAAGTGTTATGGATCTTGGCAGTATATAGACATGTTCCCTTCCTTGTGTCACTTAGAGATTGGAGCCACTGCAAGAATGATTGGAATGCATACAAATGAACAGCTGATGATATGTTTGTTAAGGACAAATGGTCTTTAAGGTCATTAGTCTAATTAGTTTGTTGTGTTTTGGAATAGAGACATTTCTTGTCAAGAACCACTTGCTTAGTTTGGGGTGGGAAATTCAGAATACATTTTGGGAACAAGCAGCCAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_03595690_03618511.mRNA True 1509 mRNA 0.43 9 3595532 3618511

Neighbor

gene id symbol gene type direction distance location
CI01000012_03437950_03468790 NA coding downstream 126679 3437789 ~ 3468853 (-)
CI01000012_03357081_03369647 FAM135A coding downstream 225885 3357081 ~ 3369647 (-)
CI01000012_03327683_03341200 NA coding downstream 254332 3327632 ~ 3341200 (-)
CI01000012_03292460_03316923 TARBP1 coding downstream 278609 3292160 ~ 3316923 (-)
CI01000012_03284445_03291645 NA coding downstream 303887 3284345 ~ 3291645 (-)
CI01000012_03717828_03724221 NA coding upstream 98949 3717460 ~ 3725744 (-)
CI01000012_03729351_03731119 NA coding upstream 110664 3729175 ~ 3732465 (-)
CI01000012_03771803_03792867 ADGRB3 coding upstream 152667 3771178 ~ 3793190 (-)
CI01000012_03794143_03871728 NA coding upstream 175439 3793143 ~ 3873248 (-)
CI01000012_03875714_03882574 NA coding upstream 256571 3875082 ~ 3882574 (-)
G70813 NA non-coding downstream 50492 3530609 ~ 3545040 (-)
G70814 NA non-coding downstream 90982 3497035 ~ 3504550 (-)
G70956 NA non-coding downstream 210019 3385306 ~ 3385513 (-)
G70916 NA non-coding downstream 358892 3231699 ~ 3236640 (-)
G70833 NA non-coding downstream 480437 2944011 ~ 3115095 (-)
G71717 NA non-coding upstream 44112 3662623 ~ 3663090 (-)
G71699 NA non-coding upstream 104616 3723127 ~ 3743099 (-)
G71767 NA non-coding upstream 125811 3744322 ~ 3744586 (-)
G71768 NA non-coding upstream 126407 3744918 ~ 3745225 (-)
G71770 NA non-coding upstream 129490 3748001 ~ 3748207 (-)
G70774 NA other downstream 728640 2866508 ~ 2866892 (-)
G69562 NA other downstream 2219234 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 2444334 1135676 ~ 1192154 (-)
G69332 NA other downstream 2819653 775364 ~ 775879 (-)
G69277 NA other downstream 2865067 729920 ~ 730465 (-)
G71898 NA other upstream 915019 4533530 ~ 4534672 (-)
G72068 NA other upstream 1157709 4776220 ~ 4780132 (-)
G72204 NA other upstream 1675262 5293773 ~ 5302206 (-)
CI01000012_05414096_05416676 TTC9 other upstream 1745131 5413369 ~ 5416780 (-)
G72294 NA other upstream 1844329 5462840 ~ 5465857 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006168 col19a1 coding NC_007124.7 CM002897.2 38814521 ~ 38856156 (+)