LOC103044939 (si:rp71-17i16.4,tnnc2,LOC103044939,LOC108434838,LOC107737591,LOC107568845,LOC101472191,LOC102782874)


Basic Information

Item Value
gene id LOC103044939
gene name si:rp71-17i16.4,tnnc2,LOC103044939,LOC108434838,LOC107737591,LOC107568845,LOC101472191,LOC102782874
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25787029 ~ 25797553 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249857.3
CCTGCAGGATGCCCACTGACGCCCAGAATGACGCACGCTCCTTTCTGAGTGAGGAGATGATTGCTGAGTTTAAGGCCGCCTTCGACATGTTTGACACTGACGGTGGCGGTGACATCAGCACCAAAGAGTTGGGCACAGTCATGAGGATGTTGGGCCAAAATCCAAGCAGAGAGGAGCTGGATGCCATCATTGAAGAGGTTGATGAAGATGGCAGTGGTACCATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAGCAGCTAAAAGAGGACCAGGCCGGCAAGAGCGAGGAGGAGCTCTCTGAATGCTTTCGTGTCTTTGACAAGAATGGAGATGGTTTCATTGACCGGGAGGAGTTTGGTGACATCATGCGCTCCACTGGGGAGCCAATCACTGAGGACGAGATAGACGAGCTCATGACAGATGGAGACACCAACAAGGATGGCAAAATTGACTTTGATGAATTTCTGAAAATGATGGAGAACGTCCAGTAAAGATGCTACATTCCACTCTTTCACCACTCAACCAAAGCCATAAACCTTTTGAAACCACAGAGAAAAAGACATAAactttatataaacattataggaACGGATCGAAGGGACTGGAGGCAGTAAATGGCCTTCTGGAATGGTCGCTGTTGGACtgtatttatatctatatataacaCTCCAAACCTTTTAAAGATGGAGCCACTTTCTCTTGTCCCCACCCCCTACCCTCCCACCTCCCACCTCCCACTTTCCCCAGCTGCCCTTGTATCTCAGCTCCTTCTTAAGACATGATCTTTCTACCATGCCTTCAAAATTGTTTTCTGCCCTGCGTGCCCTCCCCCTGTAGTGTTCCGAAATAAACCAGCCTCCGTTAACCTTGA

Function

symbol description
tnnc2 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within response to activity. Predicted to be part of troponin complex. Is expressed in fast muscle cell; head muscle; heart tube; skeletal muscle; and skeletal muscle cell. Orthologous to human TNNC2 (troponin C2, fast skeletal type).
si:rp71-17i16.4 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Predicted to be involved in regulation of muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex. Orthologous to human TNNC2 (troponin C2, fast skeletal type).

NR:

description
troponin C, skeletal muscle

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12042 TNNC2; troponin C, skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249857.3 True 874 mRNA 0.48 6 25787029 25797553

Neighbor

gene id symbol gene type direction distance location
LOC103021519 tnnc1b,LOC108276054,LOC107671989,LOC107568847,LOC107593406,LOC105890642,LOC103374679 coding upstream 242506 25540761 ~ 25544523 (+)
LOC103029812 LOC108436316 coding upstream 569026 25205788 ~ 25218003 (+)
LOC103028649 kctd6b,kctd6,LOC103028649,LOC108436290,LOC107671957,LOC107570288,LOC107737715 coding upstream 602729 25182177 ~ 25184300 (+)
LOC103028342 abhd6b,LOC108436291,LOC107712730,LOC108275644,LOC107699577,LOC107737716 coding upstream 605655 25176018 ~ 25181374 (+)
LOC103027821 NA coding upstream 612889 25135664 ~ 25174140 (+)
LOC103044421 LOC103044421,LOC108434847,LOC108276484,LOC103384678 coding downstream 1876 25799429 ~ 25802413 (+)
LOC103043212 slc35c2,col20a1,LOC108275935,LOC107712700,LOC107699598,LOC107737588,LOC107672031 coding downstream 10425 25807978 ~ 25862859 (+)
dpm1 dpm1,LOC107712706,LOC107737709,LOC107671953 coding downstream 67027 25864580 ~ 25868951 (+)
adnp adnp coding downstream 71999 25869552 ~ 25879466 (+)
LOC103045311 LOC108434771,LOC105006803,LOC106572974 coding downstream 108190 25905743 ~ 25983232 (+)
G134862 NA non-coding upstream 9871 25776700 ~ 25777158 (+)
G134838 NA non-coding upstream 50246 25735604 ~ 25736783 (+)
G134610 NA non-coding upstream 213421 25218157 ~ 25573608 (+)
G134688 LOC103046877,LOC108410447,LOC105890629,LOC107087052,LOC105935867 non-coding upstream 230953 25545602 ~ 25556076 (+)
LOC103022152 NA non-coding upstream 259738 25477464 ~ 25527291 (+)
G134896 NA non-coding downstream 122685 25920238 ~ 25927409 (+)
LOC111194125 NA non-coding downstream 261180 26058733 ~ 26061416 (+)
LOC103028539 NA non-coding downstream 455921 26253474 ~ 26259570 (+)
G134992 NA non-coding downstream 467899 26265452 ~ 26266390 (+)
G135044 NA non-coding downstream 589397 26386950 ~ 26387226 (+)
G134662 NA other upstream 325627 25460467 ~ 25461402 (+)
cfap126 cfap126 other upstream 355855 25426734 ~ 25431174 (+)
G134632 atp2b3 other upstream 462330 25320141 ~ 25324699 (+)
emd LOC108436312 other upstream 480681 25300781 ~ 25306348 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other upstream 490693 25237471 ~ 25296336 (+)
G135096 alg13,LOC107597764 other downstream 831316 26628869 ~ 26638528 (+)
LOC103044303 LOC103044303 other downstream 1398752 27196305 ~ 27197918 (+)
LOC111194129 NA other downstream 1963594 27761147 ~ 27871003 (+)
LOC103041614 NA other downstream 2215356 28012909 ~ 28040566 (+)
LOC103039855 LOC108443465 other downstream 2385753 28183306 ~ 28204183 (+)

Expression


Co-expression Network