LOC103029812 (LOC108436316)


Basic Information

Item Value
gene id LOC103029812
gene name LOC108436316
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25205788 ~ 25218003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249896.3
GTAAAACTGTAAACAATGTTAAAGCTAagGTCCAGTATGACTCTCCCTCTCCTGCTGTTCGTCCTCATTCACCTCTGTGGCCTGCTGGCATGCCATGGATTCAAAATCTGTGCTTTCAATGTTCAGAGTTTTGGAGACTCAAAAGCAGCAGATGGGAAAATTTTACACACTCTAACTCAGATTGTGTCGCGCTGTGACGTGTGCTTGCTTCAAGAGGTCAGAGATAACAAGAAGAAGGCCATTCCAAAACTGCTCAACAGCCTCAACAACTTTGACAGTAATCACCAATATGACCATGTATCAAGTGGGCGACTTGGCAGATCACAGACTTATCAGGAGCAATACGTGTTTGTATTCAGAAGGGACTCAGTGAGGCTCAAAGATCAGTATCAATACCCAGACACACAAAAAGGGGATGAGGATGCTTTCGCCAGGGAGCCCTTTGTAGTGCGATTCCAAGCACCTAAAACAGTGATTGGCGAGTTTGTCTTGGTCCCGGTTCACACGACCCCCACAAATGCCACCAAGGAGATTGATGAGCTCTATGATGTGTTTGAAGATGTAAGACAGAGATGGAGGACAGAGGACATGATGTTCCTTGGTGACTTTAATGCGGCCTGCGGATATGTAGCCAAAAAGAACAGGAAGAACATAAGACTGTACACTATGTCCTCTTTCGCCTGGCTGATAGAAGACAAACAGGACACTACAGTGAGAGAAACCACTGACTGTGCATACGACAGGATAGTCGTGCACGGAGACACGTTTCTCAGAGCTGTAGTACCATTTTCAGCTCAGCCGTTCAACTTCGCCAAAGAATATCATCTCACAGAGGAGGagGCTCTGAAAGTAAGTGACCATTACCCTATAGAAGTTGACCTGAAGACCAAGTCAGGAAGTGAGCGGGGATGCGCACACTCAAACTTGCTGCCTTTCACCTTTGGCCTTGTCCTCCGGCTTCAAATGAGTGCAGACTGATGTGCTCAATGCAGACACTTATAAgccagtttaaaatgaattaagaatGCACTGATTCCTTTACTTGAATCTTTTTCACACCAACACTGCACTTAAAAGATAAAATGCTGGGATTTTGCTGGAGTATTGTGCCAACCATTTATTTATGCTGCCGTCACAAGCTATCCTTATTGTGGTAAATATAAAGTTCCACGTCAACCACTATTTTCAAGATGAGGTGACCTGCAGTATTTTAACAAGACAATCAGTATTAAATGATAAAAGGGCTATGGGGAACCAGCACGCTtttaatttgatatttattcTATCATTTTCTCCAACAGGATATGATAATCAAATtccaaaagtgaaaaataaaatccaataaGCAACAGCATTAGTCAGGCATAATTCAATCCCTGTCCTGACACCCCCCTGGGCcagcacatttttaaaagattgCCTACTTTACTGCACTCACTGAATCAAAGAACAGGCTTGTCAATAAATCAGGTATGCCATATAGGTATAGCCACTTTCTGGACAAGGGGAGTGCAAATACCAGGATTAAAAGAAACCTAGTGGATGCAACAAGTGCCTTAAACAATAGAGaaatgtgattatttttttaaaacttactTTTACCATCATTGTGGTAAGCatgttttgtaataaaatgtttgcattttcttttc
>XM_007249897.3
GAGCTCAGAGCTCAGCCTGGAAAGGGTGGACCATCCTGTAAACACTGAGCAGAACTGAGCCTTTCCGGAGTTCAGCCTTTCATTTACTACACCAAAGAGAGCGGCTCAGTTATCTGAGGTCCAGTATGACTCTCCCTCTCCTGCTGTTCGTCCTCATTCACCTCTGTGGCCTGCTGGCATGCCATGGATTCAAAATCTGTGCTTTCAATGTTCAGAGTTTTGGAGACTCAAAAGCAGCAGATGGGAAAATTTTACACACTCTAACTCAGATTGTGTCGCGCTGTGACGTGTGCTTGCTTCAAGAGGTCAGAGATAACAAGAAGAAGGCCATTCCAAAACTGCTCAACAGCCTCAACAACTTTGACAGTAATCACCAATATGACCATGTATCAAGTGGGCGACTTGGCAGATCACAGACTTATCAGGAGCAATACGTGTTTGTATTCAGAAGGGACTCAGTGAGGCTCAAAGATCAGTATCAATACCCAGACACACAAAAAGGGGATGAGGATGCTTTCGCCAGGGAGCCCTTTGTAGTGCGATTCCAAGCACCTAAAACAGTGATTGGCGAGTTTGTCTTGGTCCCGGTTCACACGACCCCCACAAATGCCACCAAGGAGATTGATGAGCTCTATGATGTGTTTGAAGATGTAAGACAGAGATGGAGGACAGAGGACATGATGTTCCTTGGTGACTTTAATGCGGCCTGCGGATATGTAGCCAAAAAGAACAGGAAGAACATAAGACTGTACACTATGTCCTCTTTCGCCTGGCTGATAGAAGACAAACAGGACACTACAGTGAGAGAAACCACTGACTGTGCATACGACAGGATAGTCGTGCACGGAGACACGTTTCTCAGAGCTGTAGTACCATTTTCAGCTCAGCCGTTCAACTTCGCCAAAGAATATCATCTCACAGAGGAGGagGCTCTGAAAGTAAGTGACCATTACCCTATAGAAGTTGACCTGAAGACCAAGTCAGGAAGTGAGCGGGGATGCGCACACTCAAACTTGCTGCCTTTCACCTTTGGCCTTGTCCTCCGGCTTCAAATGAGTGCAGACTGATGTGCTCAATGCAGACACTTATAAgccagtttaaaatgaattaagaatGCACTGATTCCTTTACTTGAATCTTTTTCACACCAACACTGCACTTAAAAGATAAAATGCTGGGATTTTGCTGGAGTATTGTGCCAACCATTTATTTATGCTGCCGTCACAAGCTATCCTTATTGTGGTAAATATAAAGTTCCACGTCAACCACTATTTTCAAGATGAGGTGACCTGCAGTATTTTAACAAGACAATCAGTATTAAATGATAAAAGGGCTATGGGGAACCAGCACGCTtttaatttgatatttattcTATCATTTTCTCCAACAGGATATGATAATCAAATtccaaaagtgaaaaataaaatccaataaGCAACAGCATTAGTCAGGCATAATTCAATCCCTGTCCTGACACCCCCCTGGGCcagcacatttttaaaagattgCCTACTTTACTGCACTCACTGAATCAAAGAACAGGCTTGTCAATAAATCAGGTATGCCATATAGGTATAGCCACTTTCTGGACAAGGGGAGTGCAAATACCAGGATTAAAAGAAACCTAGTGGATGCAACAAGTGCCTTAAACAATAGAGaaatgtgattatttttttaaaacttactTTTACCATCATTGTGGTAAGCatgttttgtaataaaatgtttgcattttcttttc

Function

NR:

description
PREDICTED: deoxyribonuclease gamma-like

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249896.3 False 1652 mRNA 0.42 9 25206115 25218003
XM_007249897.3 True 1741 mRNA 0.43 9 25205788 25218003

Neighbor

gene id symbol gene type direction distance location
LOC103028649 kctd6b,kctd6,LOC103028649,LOC108436290,LOC107671957,LOC107570288,LOC107737715 coding upstream 21488 25182177 ~ 25184300 (+)
LOC103028342 abhd6b,LOC108436291,LOC107712730,LOC108275644,LOC107699577,LOC107737716 coding upstream 24414 25176018 ~ 25181374 (+)
LOC103027821 NA coding upstream 31648 25135664 ~ 25174140 (+)
LOC103030657 LOC108436320,LOC108276397 coding upstream 73046 25122139 ~ 25132742 (+)
LOC103031199 atp6ap1lb,LOC103031199,LOC108436292,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC105890636,LOC108275547 coding upstream 90740 25101215 ~ 25115048 (+)
LOC103021519 tnnc1b,LOC108276054,LOC107671989,LOC107568847,LOC107593406,LOC105890642,LOC103374679 coding downstream 322758 25540761 ~ 25544523 (+)
LOC103044939 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108434838,LOC107737591,LOC107568845,LOC101472191,LOC102782874 coding downstream 569026 25787029 ~ 25797553 (+)
LOC103044421 LOC103044421,LOC108434847,LOC108276484,LOC103384678 coding downstream 581426 25799429 ~ 25802413 (+)
LOC103043212 slc35c2,col20a1,LOC108275935,LOC107712700,LOC107699598,LOC107737588,LOC107672031 coding downstream 589975 25807978 ~ 25862859 (+)
dpm1 dpm1,LOC107712706,LOC107737709,LOC107671953 coding downstream 646577 25864580 ~ 25868951 (+)
G134617 NA non-coding upstream 8337 25195961 ~ 25197451 (+)
G134616 LOC107737613,LOC107671963,LOC107560871,LOC108436318,LOC107570281 non-coding upstream 9948 25193210 ~ 25195840 (+)
G134615 NA non-coding upstream 12831 25192591 ~ 25192957 (+)
G134477 NA non-coding upstream 364550 24840943 ~ 24841238 (+)
G134476 NA non-coding upstream 365440 24840129 ~ 24840348 (+)
G134610 NA non-coding downstream 154 25218157 ~ 25573608 (+)
G134630 haus7 non-coding downstream 93927 25311930 ~ 25317411 (+)
LOC103024233 NA non-coding downstream 107383 25325386 ~ 25328240 (+)
LOC103022152 NA non-coding downstream 259461 25477464 ~ 25527291 (+)
G134669 NA non-coding downstream 271577 25489580 ~ 25494180 (+)
smim4 smim4 other upstream 15482 25185816 ~ 25190306 (+)
trnae-uuc_18 NA other upstream 394788 24810929 ~ 24811000 (+)
LOC103036968 LOC108436332 other upstream 544254 24605649 ~ 24661534 (+)
G134426 NA other upstream 573658 24621908 ~ 24632130 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 702778 24489905 ~ 24503010 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other downstream 19468 25237471 ~ 25296336 (+)
emd LOC108436312 other downstream 82778 25300781 ~ 25306348 (+)
G134632 atp2b3 other downstream 102138 25320141 ~ 25324699 (+)
cfap126 cfap126 other downstream 208731 25426734 ~ 25431174 (+)
G134662 NA other downstream 242464 25460467 ~ 25461402 (+)

Expression


Co-expression Network