LOC103032751 (LOC108436294)


Basic Information

Item Value
gene id LOC103032751
gene name LOC108436294
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25016785 ~ 25021096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249906.3
TTATCACTTGGActgagcaagagagggagagagctgtgctctaaaaaggtaaaagaggGAAGAAAGGCAGAGATCACGGTTTTTCTGGAGAGAAGTTCTCAGATGGAGGACGGATACTCACCTCGTCTCAGACATTAAGAATTTCAGGCTGAAGAGGACGATGGACATTAAGGAACATCTTTCCTGTTACTCATTTTTTGGACTACGACTGGAATAGAGAATCACGGCAAGAAAAGTTTGTTTGAATTTGTTCAAATTGGAGCATCTATCTGTAAACGTTCCTTGGAAAAGTTCAGTAACAAATCCTGCAACTTGGTCTAAGAAAACACCTTGTAAGTATAAGACTAAATTGATGAGCCTTTGACCCTTCAAAGGCAGACAAAACTTCCCTGATGGAAGATTCCTTTGTATTTAATGGTACGTGATAAAATACATTCTGTGTATAATGTGCAGTGCATAAATAGCTCATGCAACTTTTAATAATTTCTGTGTGGCTTTAAACGTTCCATTACTGCGCAACCGACATGTCATAACcatctgcacaaaaaaaaagaaataggacacagctggattaaaaaacatttgcataTATCAGCAGTTCTTCTGGATTTCAGCGGCTCTAGTTCTGGGGGGCCGAGTCTTGTTTCATGCGTTTCCATACCAGCAGAATGACCTCTACACTTTTCTTAGTCTTGGTCTTTTTCTGGCTCGGCTTCTTGGAGGCTAACTGTCCTCCAGGGTGCCTGTGCCCCTCGGACATAGTGGAGTGCGGTTCTCTGGGTATGGACAGATTTCCCCCTGTGCTGCCGCCCACTACTTCCATCCTGGATCTGAGCCATAATCGGCTCACATGGTTGGCAGCCGGCAGTTTCCATGGACTGTCCAGGCTGAGCTTTCTGCGTATGTCCCATAACCAAATCTCTCTGCTCAGCCCGGCAGCCTTCCACAATGCCAGCAACTTGCGCCATGTGGACCTCTCGTCTAACCGCCTACAGGTAGTGGCGAGGCATCACTTCCAAGACCTCCCTGGGCTGGAGGAACTTCTGCTCTACAACAACCGCATCACCCGTGTAGAAAGCAATGCCCTTATGGGACTGAACAACCTCCGTAAAGTCTACTTAAGCCTCAACCAGATCACAGACTTCCCCTTCTTCTCTATTCGCAAACACAGCCATCCCAAGCTGGAAACCCTGGACCTCTCGTCCAACCGCATGTCCCGGCTACCACTGGACGATGTTGTGCTGTTGCCTGTGGCTTTGCAACGAGGCTTGTTCATCCATAACAACAGCCTGGTGTGTGACTGTTCTACGTATCGCATGTTCTGGCACTGGGATAAGGAAGGTTACAAAGCAATCAGAGACTTTAAAGATGACTATACGTGCCGGATGTACGGAGAACCTCTCACTGCCATCCGTTTCCTTCGCAGCCCACGATTCTTCGACAACTGCACTATTGAAAAGATGATTTCTCTAATCTCGCCCAAGGCCGATATGATGGTACATGAGGGGGAACAAGTCAGACTGGACTGCACTGGTACTCTCAGTAGTGTGGTCCTCTCTTATTCATGGGTCATTCCTCACCAGGAAAACCTAACACTGTTGATCCAGAATGGCTCCCTGCGGTTGAACCAAGATGGCAGCTTGGAGATCATAGCTGTCCAGTCAGGGGACTCGGGGATCTACCAGTGTGTAGCTGTGGACACAGTGAGGATGATTAATGAATCCCGTGAGGTGAACCTGACAGTGGTTTCCCAACGCATAACAGATGAACCTTTCAGCACAGGTTACACCACCCTTCTGGGCTGTGCAATCACTCTGGTGGTTATACTCATGTACCTATATCTAACTCCATGTCGCTGTGGATGCTGTAAACCCCCACCACCCTCACCAACCATATCTGGCCACGGAGACGACCGCTGTACTCTGGCATCCATCTTTGGAGCTCCGCCTAGTGAAGAGCTGAGACTGAAGGGCAAATCCAACTCTGAAAGGCACGTGGTCTTCCTTGAGCCACTCATGCAAGACAAGAACGGACACTTGACATCGGCCATTACACCTGGGCAGCCAACGCTGCTGTGGGACTCGCCGCAGATGAGCAGAATTAAAGGATGTGATGAAATCATGTAGCATGTATCAACGTATTTGTTTCACATCTGTTTGGCTGAATGAACTGTGGACCTTTTTGGCAAAGGGTTTGTGGAATTTACAGAGATATGTACTGTGTGTGCTGGAAGcaaattaagtaattttttttaagtagagtccttttatatacatatttcccaatgttatagtatagtataaattaaaataaacagaaatgagTGGCAGTGAACTGTCAATACAAAAGAAGACAACGTTAAAATTAGTAGGCATTGTGTTCCTCAGCTTCCCATAAGCAGCTCAACACATTTCCCCAGGTGTGGATTTTCCAATAAAGTCTTGCTTCAAAATTCACAAACAACCAGCATCTCTTATGAGCTTTCCAAGCTCCGGGACATCTATGGCTTACAGATTTTCTTGCGTTGTCTTTGACAGGCACGTGTTAGTGTGGGAGTACTAGCTCGGTTAAATGTGGCAAACTAAAAGATCACTGAGGATAATCCTTTTGATCACATGCTTTGAAAGGTTTGGAAACCAAGACGGCATGAATGCAGCAATGCTCTTGCCAACATGAGCGCTTGGTTCTAAGCTGAGGAGCCGTGACAACAGAGGTGGGAGGATAAAATGAGAGGAGGAATAATGTCATGGTCTGATGCCTTGGGAACAAATTAGGTCAATAGCCTTTATATCTGTGCATTTGAACATATGAGATGTTGCTGTAAGCAGATGAGGGTGGGTTGCAGAGTGGGAAATCAAGCTCCACAATCTGTTCAACATGACATTTAATCCCCTGTGTCAAGGCAAATTGAGAGCGAGCATTGGCGGCTATGGGCGTTCCAGACCCCGTGCATTGAAAACAGATGCAGAAGGTTCtgggtctattttttttaataaataagatttTCTAGAAGGCGAAAGCAGGCACAAAAGAAACCGCAGTGACGGAGCTGCAACGGCTGCTTCTGTGCGATACCATTCATGCCTAGCGCTGTGCATTAACCTAATTAAGCCATGGCAATTTTGTGAATAGGCTATGGCAAAGGATGAAACATTCCTGAAGAACTGGTGAAGAATAGCCCCTCCTACACCACTAGGGACAGTGTGCAGTAAAAGCAAAGCAAGGAACTGGAAGTGCACATACAagcaaaaacagagacaaaatcCATACTGCCAACCACCAGATACAATCAGATTAATTGCAGCAACCCCCATCCAGAATATAGGAACACGTCATCTATGTACAGAATAGGGATTACTGACGCGGTCAATCTCATTTCCGCATGCAGTTCCGCATACAATTGATTGCATTGCTCTTTTCATCAGCAACCAATGCAATGCAACACAATCCCCtaaacacacacgcatgcacaaaTATGTGCCACCAGGATAACCACTTGCTCCAACCCCAGTATATTACATATACTCATAACAGCAAGCAAGCTGATTATATAACACTCATCAAAGCTCCTCTCCGCATGCAAAGTGTCCCCGTGTATTAGAGCTGGCAGTTGTTTGCAGGGATGACCACATCACATGAGTGGAGACATGAGCCAGGGTCAGGTTTTAGCAGATTACTCTGGGGATAAAGCCAGGTGCTTTGACAATTTGCAGCCTTTGCTTAATCCCCTAAGCTTTCTTTCCCCTCAAATGTCGCAAAATGAAAGGAAAGATGGAAAGTGAGCTGGGCATGCTTTTTCCACTCCTCTCGTTTTAAATTAAGCCACTGGTATGCACAACTCACACTTAACGATGCACCACCCTACAAAGCTAATGTCTCAAATTAGTTTAATGCCCATAATAATGAGCCAGAGATGTTACTAAGAGGAGGCCAGTCACTGTTGGAAACATGGAAGAGAGTTGTTCTAATTCCCATCATGGTGTCTGTTCACAGAAGTCttaactttaaacaaaaagaGTTGAGAAGCTAAGTTGTGAGTAGAGGAGCGTGAAGATTTAtaaaagtgcagaaaaaaagtcacgttttatgtttattcatttgCCAAACACTACAAAATATTCATGAGGTTTTTAACAGATTTGATCAGTgatttcaaatgtttttgaaACTCTGTTTGTGAGATTTTTATCTGGACTCAGAACTGGTGAACTTTCTTATCAGCAAGACTGTTCACTGTTCAGTGCCCATCTCCAGTCATAAAAGACTTCTCTTCTATTTCTTAGAAAAGGGTATTTAAGAAAGAGCAAAATAC

Function

NR:

description
PREDICTED: amphoterin-induced protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249906.3 True 4312 mRNA 0.45 1 25016785 25021096

Neighbor

gene id symbol gene type direction distance location
apobec2 apobec2,apobec2b,LOC108276433,LOC107657013 coding upstream 187053 24823510 ~ 24829732 (+)
LOC103033727 LOC103033727,LOC108436326,LOC108276432 coding upstream 196101 24815369 ~ 24820684 (+)
ccdc115 ccdc115 coding upstream 201932 24811897 ~ 24814853 (+)
trnan-guu_2 NA coding upstream 211912 24804802 ~ 24804873 (+)
fkbpl NA coding upstream 215158 24798525 ~ 24801627 (+)
LOC103031199 atp6ap1lb,LOC103031199,LOC108436292,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC105890636,LOC108275547 coding downstream 80119 25101215 ~ 25115048 (+)
LOC103030657 LOC108436320,LOC108276397 coding downstream 101043 25122139 ~ 25132742 (+)
LOC103027821 NA coding downstream 114568 25135664 ~ 25174140 (+)
LOC103028342 abhd6b,LOC108436291,LOC107712730,LOC108275644,LOC107699577,LOC107737716 coding downstream 154922 25176018 ~ 25181374 (+)
LOC103028649 kctd6b,kctd6,LOC103028649,LOC108436290,LOC107671957,LOC107570288,LOC107737715 coding downstream 161081 25182177 ~ 25184300 (+)
G134477 NA non-coding upstream 175547 24840943 ~ 24841238 (+)
G134476 NA non-coding upstream 176437 24840129 ~ 24840348 (+)
G134475 NA non-coding upstream 176850 24839305 ~ 24839935 (+)
G134462 NA non-coding upstream 211989 24804059 ~ 24804796 (+)
G134434 pard6g,LOC108436329,LOC107562464,LOC107702404,LOC107754812,LOC107581070,LOC107672872 non-coding upstream 260306 24751925 ~ 24756479 (+)
G134615 NA non-coding downstream 171495 25192591 ~ 25192957 (+)
G134616 LOC107737613,LOC107671963,LOC107560871,LOC108436318,LOC107570281 non-coding downstream 172114 25193210 ~ 25195840 (+)
G134617 NA non-coding downstream 174865 25195961 ~ 25197451 (+)
G134610 NA non-coding downstream 197061 25218157 ~ 25573608 (+)
G134630 haus7 non-coding downstream 290834 25311930 ~ 25317411 (+)
trnae-uuc_18 NA other upstream 205785 24810929 ~ 24811000 (+)
LOC103036968 LOC108436332 other upstream 355251 24605649 ~ 24661534 (+)
G134426 NA other upstream 384655 24621908 ~ 24632130 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 513775 24489905 ~ 24503010 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other upstream 536413 24457876 ~ 24480372 (+)
smim4 smim4 other downstream 164720 25185816 ~ 25190306 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other downstream 216375 25237471 ~ 25296336 (+)
emd LOC108436312 other downstream 279685 25300781 ~ 25306348 (+)
G134632 atp2b3 other downstream 299045 25320141 ~ 25324699 (+)
cfap126 cfap126 other downstream 405638 25426734 ~ 25431174 (+)

Expression


Co-expression Network