ccdc115 (ccdc115)


Basic Information

Item Value
gene id ccdc115
gene name ccdc115
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24811897 ~ 24814853 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249908.3
GGAGGGCAGTGTTTCCCCCGTCAGCTGACTCTGTCATGTGACCTGTTATGGCGGCGCAGGTTTGAGGAGGAACTGGGCTGAATTCAGCATCTTAATAATATAAACGTGTTGTTTTGTTCACTCGGTTGTACCGCCTAAAGCTCCGTTTTAACTGCCGAAAATGGGTCTCGATCCAGTCTCTGTAAATCTGGATCAAAAGCTGCTTGAGTTCATGGATCAGCTCgagctgctggaggagaaaaggCAGAGACTGAATTCACTCATAGAGGAGGGATGGTTTAACATTTCCAAGGCGCGGTACTCGATGGGAAATAAGCAGGTCTCCGCTCTGCAGTTCGCCAGCGAAATAGAACCGCAGATCTGCGTTCATTCCAGCCTTTCAGAAAAAGGTAATGTGGAGTTCAAGTGTGAAAGAACAGAGCCCAAAACAGAAGAACTGGAACCGAGTGGTACAGTAGAGAACATAGGACCAAAAGAGGGAGGCCTTAGAAGGAgaactaaaattaaacagaaagaAACTACAGTAGAAGAAACTTCAAAGTGTGAAAAGGAATCACAGGACAGCATAAAGAGTGAGAAATCGCCATGCCAGCATCAAGATCCACTGAAATGGTTTGGAATCCTTGTACCACAAAATCTAAAGCAAGCTCAGGCTGCTTTTAAAGAAGTTATCACACTGTCAGCGGAGATAGCAACCCTTCAGAGTGCAATTCTGGCCACTAGGATGGAGATGCAAACTCAAATgaaggaaaaacacaaaattcagTCTGTATTGGAAGGATAATACATACCATtgtatatgtttgtttgttcgttTTGGGATTAATTCTAATTTGTTTCTCAATCTTTCTTAtctccagaaaaaaaactgtgtaaacaTCACCCTGCACATACAGTTGAAAGACTATTTGTGGTTTATGCATTCCTATTAAACAGCTCAATACTGAGTAATACTGAGATATGTGTGCTGAATGTGATTTGTATTGAGTTCTTTTGCATGTATTACTTGCTTGAGACTGTGCTTTAGGATATGTGCttatgttaatttaaaaacacattaaagtaTATTTCTTTTCAAAGGCAGAAGGAATTGTGGAATAAGA

Function

symbol description
ccdc115 Predicted to enable unfolded protein binding activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in endoplasmic reticulum. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be extrinsic component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIo. Orthologous to human CCDC115 (coiled-coil domain containing 115).

NR:

description
coiled-coil domain-containing protein 115

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
K23543 CCDC115; coiled-coil domain-containing protein 115

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249908.3 True 1103 mRNA 0.41 5 24811897 24814853

Neighbor

gene id symbol gene type direction distance location
trnan-guu_2 NA coding upstream 7024 24804802 ~ 24804873 (+)
fkbpl NA coding upstream 10270 24798525 ~ 24801627 (+)
LOC111194043 NA coding upstream 261289 24542246 ~ 24550608 (+)
LOC103045451 avpr2,LOC108436342 coding upstream 516623 24242500 ~ 24295274 (+)
LOC103045952 idh3g,LOC108436344,LOC108275983,LOC108425561,LOC108276129 coding upstream 625149 24169405 ~ 24186748 (+)
LOC103033727 LOC103033727,LOC108436326,LOC108276432 coding downstream 516 24815369 ~ 24820684 (+)
apobec2 apobec2,apobec2b,LOC108276433,LOC107657013 coding downstream 8657 24823510 ~ 24829732 (+)
LOC103032751 LOC108436294 coding downstream 201932 25016785 ~ 25021096 (+)
LOC103031199 atp6ap1lb,LOC103031199,LOC108436292,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC105890636,LOC108275547 coding downstream 286362 25101215 ~ 25115048 (+)
LOC103030657 LOC108436320,LOC108276397 coding downstream 307286 25122139 ~ 25132742 (+)
G134462 NA non-coding upstream 7101 24804059 ~ 24804796 (+)
G134434 pard6g,LOC108436329,LOC107562464,LOC107702404,LOC107754812,LOC107581070,LOC107672872 non-coding upstream 55418 24751925 ~ 24756479 (+)
G134444 arfgef2,LOC108436330,LOC107737629,LOC107562465,LOC107671990 non-coding upstream 92509 24715513 ~ 24719388 (+)
G134430 NA non-coding upstream 156049 24654175 ~ 24655848 (+)
G134371 NA non-coding upstream 286325 24525092 ~ 24525572 (+)
G134475 NA non-coding downstream 24452 24839305 ~ 24839935 (+)
G134476 NA non-coding downstream 25276 24840129 ~ 24840348 (+)
G134477 NA non-coding downstream 26090 24840943 ~ 24841238 (+)
G134615 NA non-coding downstream 377738 25192591 ~ 25192957 (+)
G134616 LOC107737613,LOC107671963,LOC107560871,LOC108436318,LOC107570281 non-coding downstream 378357 25193210 ~ 25195840 (+)
trnae-uuc_18 NA other upstream 897 24810929 ~ 24811000 (+)
LOC103036968 LOC108436332 other upstream 150363 24605649 ~ 24661534 (+)
G134426 NA other upstream 179767 24621908 ~ 24632130 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 308887 24489905 ~ 24503010 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other upstream 331525 24457876 ~ 24480372 (+)
smim4 smim4 other downstream 370963 25185816 ~ 25190306 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other downstream 422618 25237471 ~ 25296336 (+)
emd LOC108436312 other downstream 485928 25300781 ~ 25306348 (+)
G134632 atp2b3 other downstream 505288 25320141 ~ 25324699 (+)
cfap126 cfap126 other downstream 611881 25426734 ~ 25431174 (+)

Expression


Co-expression Network