CI01000012_04179776_04184166


Basic Information

Item Value
gene id CI01000012_04179776_04184166
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4179776 ~ 4184450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_04179776_04184166.mRNA
CCATGTGCCAATGGAGGACATTGTGTTCTTAACAACATCACCAGTTATGGTTGTGTTTGTGCACCTGGATGGACTGGGCTGACCTGCTTGGTCAACATAAATGAGTGTGTCCAGCACAGGTGTCAGAACGGAGCCACCTGCGTGGATGAGGTTGGTGGGTACAGAGATACTGTTTTATGCATTCCAAGTTGCCTTTGTGGTCACGGATACACTGGAGTCCACTGCGAACTTGACATTGACTTCTGCTCTGGGCATCAGTGTTCAGAACACGCCGTCTGTCTGGACCAACAGCACAACTACACCTGTCACTGCATGCTGGGATATGAGGGAACATTCTGTGAGCTTGAGACGGATGAATGCAAAAGTGCACCCTGCGCCAACAGTGCCACTTGCATTGATCTGGTGGCAGGATACCAATGTCTGTGTGCTCCAGGATTTAAGGGTCAAACATGCTCCGAGAATATGAATGAGTGCCAGTCCAGACCCTGTCTTAATGGGGGCACCTGCATTGATCTGGTCAATTACTACATTTGTATCTGTCCACTCGATAATCTACCAGCCCAAGGGAAGGAGGATCCATCAGTGTAAATTTTCTAGTGTTTATTAAAACGGTCTCTCTTTAATTCTCTCAAACACGATGGTGACAGAAAACAGACCTCCATCTTGTCAGGACAGGTCTCATTAGAGGGCATGATTCTTACGGGAGATGGTATGGTGTTGGAGGATGTGATCAGGTTAGAACCTTAAAAATTCATTTAGATTTCAGAATTCAACATTCAAGATTGAATCTTAAAATAATAAGTGATGGGAAGCCATTTTCGAAAGCCTGTTCTCGGGAAACAATGCCTGAAAATCTCAGCATTTCATTTTAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19601 EYS; protein eyes shut

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_04179776_04184166.mRNA True 872 mRNA 0.45 4 4179776 4184450

Neighbor

gene id symbol gene type direction distance location
CI01000012_04052923_04100797 NA coding upstream 78776 4052613 ~ 4101000 (+)
CI01000012_03989870_04006406 NA coding upstream 173181 3989711 ~ 4006595 (+)
CI01000012_03736684_03742335 LMBRD1 coding upstream 436710 3736636 ~ 3743066 (+)
CI01000012_03633636_03709136 LMBRD1 coding upstream 470640 3633636 ~ 3709136 (+)
CI01000012_03414617_03418724 NA coding upstream 760368 3414617 ~ 3419408 (+)
CI01000012_04209791_04237026 NA coding downstream 24576 4209026 ~ 4237160 (+)
CI01000012_04266133_04266370 NA coding downstream 81683 4266133 ~ 4267426 (+)
CI01000012_04285964_04292319 NA coding downstream 101144 4285594 ~ 4293775 (+)
CI01000012_04371425_04373907 NA coding downstream 186975 4371425 ~ 4373991 (+)
CI01000012_04386557_04402516 NA coding downstream 201753 4386203 ~ 4402975 (+)
G71158 NA non-coding upstream 69500 4109941 ~ 4110276 (+)
G71156 NA non-coding upstream 72654 4106835 ~ 4107122 (+)
G71152 NA non-coding upstream 91534 4087869 ~ 4088242 (+)
G71145 NA non-coding upstream 111943 4067613 ~ 4067833 (+)
G71305 NA non-coding downstream 54675 4239125 ~ 4239406 (+)
G71375 NA non-coding downstream 162354 4346804 ~ 4347380 (+)
G71238 NA non-coding downstream 297188 4481638 ~ 4505484 (+)
G71239 NA non-coding downstream 344906 4529356 ~ 4585221 (+)
CI01000012_04551570_04571150 SGPP1 non-coding downstream 360414 4551169 ~ 4571339 (+)
G70029 NA other upstream 1548391 2622478 ~ 2631385 (+)
G68725 NA other upstream 3494920 683523 ~ 684856 (+)
G68660 NA other upstream 3643823 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 3974002 193903 ~ 195676 (+)
CI01000012_04424569_04425090 NA other downstream 235789 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 314003 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 992445 5176895 ~ 5180970 (+)
G71199 NA other downstream 1228800 5413250 ~ 5416785 (+)
G71218 NA other downstream 1351402 5535852 ~ 5538384 (+)

Expression


Co-expression Network