LOC103029094 (LOC108429302,LOC107696986,LOC107705726,LOC107594424,LOC107724192)


Basic Information

Item Value
gene id LOC103029094
gene name LOC108429302,LOC107696986,LOC107705726,LOC107594424,LOC107724192
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 20253247 ~ 20281369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250756.3
CGCCTCGTAAGCACCGGCCTGGCTGAGCCGGAGAAAACAAACTGCGTggagagaagcagcagcatgaGACCTGAAGGACTCAGCGAGCTCCTACAACTGTTCTCCTGAGACCGGGAGTGAAATTTACTGCAGAACAGATTGGTGTCAAGCATCCAGCATGACCAAGACCCCCCCTCACCGACAAGGGATCACGTTTGAGGTGGGGGCACCATTGGAGGCCCGTGACAGCCTGAAAAACTGGTATGTGGCCAACATAGAGAAGATTGACCATGAGGAGGAGAAGATCCTGATTCACTACCGGCAGTGGAGCCATCGCTACGATGAGTGGTTTGACTGGAACAGTCCGTATCTGCGGCCTGTGGAACGTGTCCAGCTCCGGCGGCAGGGCCTGCAGGAGCACACGAACCCGgGATTTCATATTAACCAAAAAGTTCTTGCCAGCTGGTCAGACTGCCGCTATTACCCTGCTAAGATCCTCTCCCTCGATAAAGATGATTTCTACACAGTGAAGTTTTTCGATGGGGTTGTCAAGACTGTGAAGGGAATAAAGATTAAGCCCTTTAATAAGGAGaatggcaAGTCTGCACCTCAAAGCCAAAAGCGTGGCGGCCCgccagtaaaacactgtaaggCCAAAGAGAACGGCACAGGCAGGAGCAACGGCAGGAGGCATAGCACCTCCGACCATGATGTGCTCAGTGACTCAGAAGGGAAAAACAACAAGTTAACTGTGGAACCCAGCAAGCTGCAGAACGGCACAGCGGACAAGAGCGAAGTAACAGAGAGGGTAAACGGGACTGCGGAGACAGAGGAGACGTCGCccagaggagaagagaagaccAAAGTACCAGAGAACAGAGAagaggaggggagagaggtgaaTGGAGGAGCAGAGGAGGAGAAAGCAGACACGCTTCAGAATGGCACTCATGAGAGCAATGAGGAGAAACAGGAGAAAGATGAAGCATCAGATCCTGGTCCCGGCCTGGCCACGAGGACAAGGAGCAAGGTGGCAGCTGAAGGCAAAGATGCAGAAAAGCCAAACGTGCCAGAACTGAGGAAGCGACGTGCATCCTCAGGACAAGCGCCTCCGTCCAAGAGGAGCAGAGCCAACTCAAGTACAGACAGAACCAGTCGATCACACATCCTGCCTGCTAAACCAGATTCCATCCAAAAAAGCTCAGAAGATAAAGAGAGCCACGCTCAGCCAGTCCATCCAGAGACCCCTAACCTTACAGGAGAGTCAGGGCCCACGGCTGATCAtgcgGGATTAATGCAGCGGCAAACTCACCTTCCAACCTCCAATAAATACAGCAGGGAACCATTGTACAGAGTCATCAAAAACCAGCCGCCACCCATCCTCTCCATTGAGCTGGACCACAACCCCTTTAAGTGCCAGGTCCCCGGCTGCACAAAGTCCTTCCGCAAAGCCTCTCTCCTACACTACCACATGAAGTACTACCACTCACAGAGCGACCTGAGCCCCACCTGCAGCGTCCAGGCGCGAGCCTCCGACCGGCAGCCCCACTGCCAGGAGACCCCCCGCAGGCGCCGCACTGTTTCTGCGTCACTAGACACTCCATCTCCTCTGAGTGACAGCAAGTCTGGCCACACTCAGTCACCCCCTACTGCCAATGGCGTGCATCGCCAGCGCAGTTCCTCCCACTGCGAGCGAAGCAAAGAAAACCAGCACGCCAACCGCTCCCTCCATGACGACAGAGACTGGGTCGCCATGGAAACAGAACGAGAGAAACGACGAGAGAGGAGACAAAGAGATTTATTCTGCATCAAgtcaaagaaaaagaagaagaagaaaaagaagtccAAGTCAGGTGAAGACAGTGGCAGTGATTGGTCCACAGAAAGCCCCCCGTGGAGTGAGGAGGAGTCTGAGTTGGGGCTGGGCCAGAACACACCCCTCTCTGAGCAGGGCGTGGAAACCGTGACTCATGCATCGGAGATTgttcggtgtgtgtgtgaggtgcagGAGGAGAACGACTTCATGATCCAGTGTGATGAGTGTCTGTGCTGGCAACACGGCACATGCATGGGTCTGTATGAGGACAGCGTACCTGACTCCTACAACTGCTACATCTGCAGGGACCCTCCAGctcagagGCAGAGTCAGCGTTACTGGTATGATAAGGATTGGCTGAGCAGTGGTCACATGTGTGGACTGTCCTTCCTGCAAGAGAACTACTCGCACCAGAACAGTAAGAAAATGGCCACCACACACCAGCTCTTGGGTGACGTCCACCGCGTGTTCGAGGTGCTCAACGGCCTTCAGCTCAAGATGAGCATCCTACAGACACAATCCCACCCAGATCTGAAGTTGTGGCGGCAGCCCTGGAGGTCGAACGAGGGTGTGCGCAAGAAATGGACGAGTGACTCCGGAATTACCACACCTTCTCCCCCCTCTCCTCAAGCATCAGACCCAAAGGATGGCGAGCCTGAGTCACCGTCGCCAGTGGGGACCCCCTATTCGTTTCACACCTCCTACATCAGCAGTGAGCACTGCTATCAGAAACCGCGTACATACTACCCGGTGCTGGAGCGGCGGCTGGTAGTAGAGACTCGAGGAGGTTCGGAGCTGGAGCACAGCCTGCGCAGCAGCGAGGATCTGCTGGAGCTCGCTGAGCATCGATACAGTGCCCCGCTGGAGTACGACCAGTGCAAACTGCAGCTGGCTGACTGCACCATCGGCAGCGCTAAGGAGCGAGAGTGTCGTATGAAGCTGCTGGCAGCCGCCGAGCGAGAGAAGAACTGTGTTGTCGAGGTAAAAGAGGAGGAGCCTGACCCCGTGACCTGTGACGTCAAGCCTGATCCTGATCTGCTGCTACACCAGCAGTGGCAGCTGAACCTGCTAGAACACATCGAGGCCGTACAGGAGGAAGTCAGCCACAGAATGGACCTTATAGAAAGGGAACTGGATGTTTTGGAAAGCTGGCTGGACTACACAGGCGAGCTGGAGCCTCCGGACCCTCTGGCTCGGCTACCTCAGCTGAAACACCGCATCAGACAGCTACTGACTGATCTGGGAACTGTTCAGCAGATCGCACTCTGCTCCTCTTCCACATGAGGGCGCCAGAGCACACGGCTGATATTCAGTGTGAAGAGACTTGAACCCTGAACTGAACAGACACTGTACTGGTATTGGTGGTGAGGCGCGGTTGGCCAACATGTTATGCTTCTATTTTGATGGCACGTCCCATTCACCAGTCCTCTGGAGGAAACTCCAGGCCAAACGAATCAAGCCATTACAGAAAAGCAGAGAGCGAGCCAGCGAGACGGAAGGGGAGAGTAACTTGAAAAAAGCTTGGCGGTAGGTTAGAGACTTGAATGTATATGATGAGGGTTGTGGTCCATTTTTGGGGCATAAATTACTCATAGTTTagaatttcttgttttttttttttttgggttgagAATGCATCTTAAAATGAGGGTAATGGCATTAAATGCAATGTAAGAAAcatttgaaactttttttttccaaattatgGAAGCTTTTGTTTTTGGCACTTAGGATTATAGTTGTTGGTTATCAGCATTATAAATATTCAATTGTTATAATTGTGTTTGATTGCAGACATTATTATGCAAAAGGTATCCTCCTGTGGCTCTgtagggagagaaagagagagatttgtgGCAATGGCAATGGGAAGAGTTTTGTAGCTGTtttaaaaaggaacaaaaaaaagagaaaagaagtaCACATGAAATgttaatatgaaaatatattttaatctgaAAAGTAATTGCATCTTTCTTCTATATTTGTACTGAATAGACAATGTAAATTGCCTACTGTGTAATAATACTGTTTAATCCATGTTCCAGACAGTTTCTGCTTGTTCATTTTTGCTATAACATTTGATCTAAACGGCAATGTTATTAACTGTGAGTCTGCATtcatattaatagtaataatattaataataggaCATTTATCCTTAATCTCTTGTGAATACTGTAGTACTGTTGTTTCTTTCATGTCTGCCTCTGTTTGGTTTCGACATGATGGCTATTGCTTGTGTTTCCTGTGAATGCAAATGTTTTTACTGGTGTATTTACCAAGCACAAATGGTTTTCAGATTTTCATATGGAAAAATGTATGTCATTTGTTTCCCCATTTTTCTCTCCGTTTTAGGATCCTGAAACATTCTGTACTGTCATTTCCAAATGGGTATATTTTCCATGTTTTACGTTTTCGAGGCTTTagctctcttttttatttattgtaattgagAATTTAAGTTATTGGTTTTGCTatatctttgtttttctttcattcattcattcactcgaTCAGTTATGTATTCTTTAtacaaacctgttttttttttttttcctcccctctccccccaacccccccttATTCTGCCTGACCCCAAAGCTaccctgccctgcacattttactgGTAATCAGATTTGTTTGGAACAAGGGGAGGTAAAAGAAAAGACTGCTGCTTTATAACAAAAGTACTTTTCACCTGTTAAATCGTCCCAGAACACATCAGAAGGGAAAGGATTTGGACAGTCTGTATAATAACCAGTAAA
>XM_015606211.2
GCGCCTCGTAAGCACCGGCCTGGCTGAGCCGGAGAAAACAAACTGCGTggagagaagcagcagcatgaGACCTGAAGGACTCAGCGAGCTCCTACAACTGTTCTCCTGAGACCGGGAGTGAAATTTACTGCAGAACAGATTGGTGTCAAGCATCCAGCATGACCAAGACCCCCCCTCACCGACAAGGGATCACGTTTGAGGTGGGGGCACCATTGGAGGCCCGTGACAGCCTGAAAAACTGGTATGTGGCCAACATAGAGAAGATTGACCATGAGGAGGAGAAGATCCTGATTCACTACCGGCAGTGGAGCCATCGCTACGATGAGTGGTTTGACTGGAACAGTCCGTATCTGCGGCCTGTGGAACGTGTCCAGCTCCGGCGGCAGGGCCTGCAGGAGCACACGAACCCGgGATTTCATATTAACCAAAAAGTTCTTGCCAGCTGGTCAGACTGCCGCTATTACCCTGCTAAGATCCTCTCCCTCGATAAAGATGATTTCTACACAGTGAAGTTTTTCGATGGGGTTGTCAAGACTGTGAAGGGAATAAAGATTAAGCCCTTTAATAAGGAGaatggcaAGTCTGCACCTCAAAGCCAAAAGCGTGGCGGCCCgccagtaaaacactgtaaggCCAAAGAGAACGGCACAGGCAGGAGCAACGGCAGGAGGCATAGCACCTCCGACCATGATGTGCTCAGTGACTCAGAAGGGAAAAACAACAAGTTAACTGTGGAACCCAGCAAGCTGCAGAACGGCACAGCGGACAAGAGCGAAGTAACAGAGAGGGTAAACGGGACTGCGGAGACAGAGGAGACGTCGCccagaggagaagagaagaccAAAGTACCAGAGAACAGAGAagaggaggggagagaggtgaaTGGAGGAGCAGAGGAGGAGAAAGCAGACACGCTTCAGAATGGCACTCATGAGAGCAATGAGGAGAAACAGGAGAAAGATGAAGCATCAGATCCTGGTCCCGGCCTGGCCACGAGGACAAGGAGCAAGGTGGCAGCTGAAGGCAAAGATGCAGAAAAGCCAAACGTGCCAGAACTGAGGAAGCGACGTGCATCCTCAGGACAAGCGCCTCCGTCCAAGAGGAGCAGAGCCAACTCAAGTACAGACAGAACCAGTCGATCACACATCCTGCCTGCTAAACCAGATTCCATCCAAAAAAGCTCAGAAGATAAAGAGAGCCACGCTCAGCCAGTCCATCCAGAGACCCCTAACCTTACAGGAGAGTCAGGGCCCACGGCTGATCAtgcgGGATTAATGCAGCGGCAAACTCACCTTCCAACCTCCAATAAATACAGCAGGGAACCATTGTACAGAGTCATCAAAAACCAGCCGCCACCCATCCTCTCCATTGAGCTGGACCACAACCCCTTTAAGTGCCAGGTCCCCGGCTGCACAAAGTCCTTCCGCAAAGCCTCTCTCCTACACTACCACATGAAGTACTACCACTCACAGAGCGACCTGAGCCCCACCTGCAGCGTCCAGGCGCGAGCCTCCGACCGGCAGCCCCACTGCCAGGAGACCCCCCGCAGGCGCCGCACTGTTTCTGCGTCACTAGACACTCCATCTCCTCTGAGTGACAGCAAGTCTGGCCACACTCAGTCACCCCCTACTGCCAATGGCGTGCATCGCCAGCGCAGTTCCTCCCACTGCGAGCGAAGCAAAGAAAACCAGCACGCCAACCGCTCCCTCCATGACGACAGAGACTGGGTCGCCATGGAAACAGAACGAGAGAAACGACGAGAGAGGAGACAAAGAGATTTATTCTGCATCAAgtcaaagaaaaagaagaagaagaaaaagaagtccAAGTCAGACTCTCACAGCAGTGAGAAGAGCACTGGCTTTAGCTCCTCCCCCTTCAATCTGAAACTGTCGCTCAAATTGCCCCTCTCCCACAAACACTGCTCCCACGCTGCACACTGCCCCGAACAGGAGCTGGATGATGGTGAAGACAGTGGCAGTGATTGGTCCACAGAAAGCCCCCCGTGGAGTGAGGAGGAGTCTGAGTTGGGGCTGGGCCAGAACACACCCCTCTCTGAGCAGGGCGTGGAAACCGTGACTCATGCATCGGAGATTgttcggtgtgtgtgtgaggtgcagGAGGAGAACGACTTCATGATCCAGTGTGATGAGTGTCTGTGCTGGCAACACGGCACATGCATGGGTCTGTATGAGGACAGCGTACCTGACTCCTACAACTGCTACATCTGCAGGGACCCTCCAGctcagagGCAGAGTCAGCGTTACTGGTATGATAAGGATTGGCTGAGCAGTGGTCACATGTGTGGACTGTCCTTCCTGCAAGAGAACTACTCGCACCAGAACAGTAAGAAAATGGCCACCACACACCAGCTCTTGGGTGACGTCCACCGCGTGTTCGAGGTGCTCAACGGCCTTCAGCTCAAGATGAGCATCCTACAGACACAATCCCACCCAGATCTGAAGTTGTGGCGGCAGCCCTGGAGGTCGAACGAGGGTGTGCGCAAGAAATGGACGAGTGACTCCGGAATTACCACACCTTCTCCCCCCTCTCCTCAAGCATCAGACCCAAAGGATGGCGAGCCTGAGTCACCGTCGCCAGTGGGGACCCCCTATTCGTTTCACACCTCCTACATCAGCAGTGAGCACTGCTATCAGAAACCGCGTACATACTACCCGGTGCTGGAGCGGCGGCTGGTAGTAGAGACTCGAGGAGGTTCGGAGCTGGAGCACAGCCTGCGCAGCAGCGAGGATCTGCTGGAGCTCGCTGAGCATCGATACAGTGCCCCGCTGGAGTACGACCAGTGCAAACTGCAGCTGGCTGACTGCACCATCGGCAGCGCTAAGGAGCGAGAGTGTCGTATGAAGCTGCTGGCAGCCGCCGAGCGAGAGAAGAACTGTGTTGTCGAGGTAAAAGAGGAGGAGCCTGACCCCGTGACCTGTGACGTCAAGCCTGATCCTGATCTGCTGCTACACCAGCAGTGGCAGCTGAACCTGCTAGAACACATCGAGGCCGTACAGGAGGAAGTCAGCCACAGAATGGACCTTATAGAAAGGGAACTGGATGTTTTGGAAAGCTGGCTGGACTACACAGGCGAGCTGGAGCCTCCGGACCCTCTGGCTCGGCTACCTCAGCTGAAACACCGCATCAGACAGCTACTGACTGATCTGGGAACTGTTCAGCAGATCGCACTCTGCTCCTCTTCCACATGAGGGCGCCAGAGCACACGGCTGATATTCAGTGTGAAGAGACTTGAACCCTGAACTGAACAGACACTGTACTGGTATTGGTGGTGAGGCGCGGTTGGCCAACATGTTATGCTTCTATTTTGATGGCACGTCCCATTCACCAGTCCTCTGGAGGAAACTCCAGGCCAAACGAATCAAGCCATTACAGAAAAGCAGAGAGCGAGCCAGCGAGACGGAAGGGGAGAGTAACTTGAAAAAAGCTTGGCGGTAGGTTAGAGACTTGAATGTATATGATGAGGGTTGTGGTCCATTTTTGGGGCATAAATTACTCATAGTTTagaatttcttgttttttttttttttgggttgagAATGCATCTTAAAATGAGGGTAATGGCATTAAATGCAATGTAAGAAAcatttgaaactttttttttccaaattatgGAAGCTTTTGTTTTTGGCACTTAGGATTATAGTTGTTGGTTATCAGCATTATAAATATTCAATTGTTATAATTGTGTTTGATTGCAGACATTATTATGCAAAAGGTATCCTCCTGTGGCTCTgtagggagagaaagagagagatttgtgGCAATGGCAATGGGAAGAGTTTTGTAGCTGTtttaaaaaggaacaaaaaaaagagaaaagaagtaCACATGAAATgttaatatgaaaatatattttaatctgaAAAGTAATTGCATCTTTCTTCTATATTTGTACTGAATAGACAATGTAAATTGCCTACTGTGTAATAATACTGTTTAATCCATGTTCCAGACAGTTTCTGCTTGTTCATTTTTGCTATAACATTTGATCTAAACGGCAATGTTATTAACTGTGAGTCTGCATtcatattaatagtaataatattaataataggaCATTTATCCTTAATCTCTTGTGAATACTGTAGTACTGTTGTTTCTTTCATGTCTGCCTCTGTTTGGTTTCGACATGATGGCTATTGCTTGTGTTTCCTGTGAATGCAAATGTTTTTACTGGTGTATTTACCAAGCACAAATGGTTTTCAGATTTTCATATGGAAAAATGTATGTCATTTGTTTCCCCATTTTTCTCTCCGTTTTAGGATCCTGAAACATTCTGTACTGTCATTTCCAAATGGGTATATTTTCCATGTTTTACGTTTTCGAGGCTTTagctctcttttttatttattgtaattgagAATTTAAGTTATTGGTTTTGCTatatctttgtttttctttcattcattcattcactcgaTCAGTTATGTATTCTTTAtacaaacctgttttttttttttttcctcccctctccccccaacccccccttATTCTGCCTGACCCCAAAGCTaccctgccctgcacattttactgGTAATCAGATTTGTTTGGAACAAGGGGAGGTAAAAGAAAAGACTGCTGCTTTATAACAAAAGTACTTTTCACCTGTTAAATCGTCCCAGAACACATCAGAAGGGAAAGGATTTGGACAGTCTGTATAATAACCAGTAAA

Function

NR:

description
PREDICTED: PHD finger protein 20-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18402 PHF20; PHD finger protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250756.3 False 4563 mRNA 0.49 18 20253248 20281369
XM_015606211.2 True 4696 mRNA 0.49 19 20253247 20281369

Neighbor

gene id symbol gene type direction distance location
LOC103028561 LOC108429303 coding upstream 7556 20135533 ~ 20245691 (+)
LOC103040552 sulf2,sulf2b,LOC108429304,LOC107693554,LOC107724188,LOC107705722 coding upstream 120371 19908724 ~ 20132876 (+)
sycp2 NA coding upstream 825417 19401855 ~ 19427830 (+)
LOC103042623 LOC103042623,LOC108438215 coding upstream 852703 19398175 ~ 19400544 (+)
ttll9 ttll9 coding upstream 859869 19382312 ~ 19393378 (+)
sla2 sla2 coding downstream 127836 20409205 ~ 20427079 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560 coding downstream 890588 21171957 ~ 21247961 (+)
myt1 LOC108440949 coding downstream 1498195 21779564 ~ 21859171 (+)
LOC103034797 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC107707759,LOC107558232,LOC100536777 coding downstream 1589088 21870457 ~ 21880919 (+)
plagl2 plagl2,LOC107558237,LOC107681868,LOC107707758,LOC107747490,LOC107559482 coding downstream 1642966 21924335 ~ 21992497 (+)
G133234 NA non-coding upstream 294339 19953156 ~ 19958908 (+)
G133236 NA non-coding upstream 298914 19948944 ~ 19954333 (+)
G133223 NA non-coding upstream 349211 19903733 ~ 19904036 (+)
G133220 NA non-coding upstream 356542 19896497 ~ 19896705 (+)
G133154 NA non-coding upstream 931933 19321058 ~ 19321314 (+)
G133255 NA non-coding downstream 5577 20286946 ~ 20287212 (+)
G133259 NA non-coding downstream 98063 20379432 ~ 20381174 (+)
G133257 NA non-coding downstream 127283 20408652 ~ 20440745 (+)
G133269 NA non-coding downstream 170794 20452163 ~ 20552471 (+)
G133277 ccm2l,LOC106566342,LOC102778549 non-coding downstream 208274 20489643 ~ 20492524 (+)
G133246 NA other upstream 128699 20123390 ~ 20124548 (+)
LOC103042214 LOC103042214 other upstream 892356 19347468 ~ 19360891 (+)
G133076 NA other upstream 1209061 19043494 ~ 19044186 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 2728894 17479938 ~ 17524353 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 11794 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 485547 20766916 ~ 20783861 (+)
G133501 NA other downstream 727374 21008743 ~ 21015058 (+)
G133502 NA other downstream 728538 21009907 ~ 21015916 (+)
G133503 NA other downstream 730361 21011730 ~ 21017977 (+)

Expression


Co-expression Network