CI01000012_04386557_04402516


Basic Information

Item Value
gene id CI01000012_04386557_04402516
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4386203 ~ 4402975 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_04386557_04402516.mRNA
GTATTAATGCCAAATTTTGTCAATTTTAACAGTTTAATTTATTTATTTTAGAAACTCTTTTTCCCCTCAGAACCCTTATGGATTTAAAAACCCATCCTAGACCACTGACTTTATGTTCATTTATGAGTGAACATCATTTTAATCATATGCCAAATCAAGTGCTGTTCATTTCTGTATCTGTAAAATATTTTTAACAAAGTGCACTTTTACTTGCACTTGCACTGCAAGATCAGTTGATGTTGGTCTGACAAGGATGGTCTCGAGTTCAGGCCGGTGATGTATGACTTCCATCCATTCCACTCTGTGTTCTCATTTGTATTCTCCTCTGCTTTTTTGACACACTCAACCCCCCCAATGCCCCTTCCCAATTTATGCTTTCTACGCAAACTCCACCGAAGCAATGCGGAGAACTGGTTCTGTGCGTGTCCTTCGCTCTACTCCGGTAAGCTGTGCCAGTTCACCGCCTGCGAGCGAAACCCGTGTGCACGCGGCGCCACCTGCGTTCCCCAGACACAGCTCGAAGCGGCGTGTCTTTGCCCCTACGGAAGGCAGGGTCTCCTCTGCGATGAGGGCGCTGTGCAAATAAACCGCGACAAGGTAATATATGTGCAATTTCAAAAGGCATCAATAATTCAAGGGGAGAGCAGAGGGAAGAACTTCAATGCTGTTCCCAGAGAAATCCTCCGGAGAGGCTTTGCAGACTGCACAGTTCATAAAGACAAAATGAGGGGTGGAGAAAACTCTTTAGCTGTCAACATCACTCGGCCCAGGTTTAGTGGACTAGATGAATTTGGATACTCATCCTATGTGGCTTATCCCTCTATTCCCAGTATGGGTCATTTTTATGAATTCCACCTGAAGCTCACCTTTGCCAATAATGTCTCCGCTTTGAGAAACAGCCTCATTCTCTTTTCTGGGCAAAAGGGACAAGCTGAGGCCATGTTAGAGGAAGTGAGGTTTGGAAATAGTATCACTCAACTAGGAGATATTAATGGAGCAGCTCCTGTAAAATGTGCTGTAAATGTTGATGGGCAGAAGAGGAGGACAGGTACATCCACTGGTCCACTGGTGGGCCTGAACACCTTCAGTCAACTTTATGTGGGTGGATATGAAGAATACACACCTGAGCTGTTGCCTGCGGGCTCACGTTTCCAGAACAGCTTTCAAGGAGGGCCAGAGGGCAGGCCAGAGTCAGGACGTAATGTGGGGCAGTGTGGTGTTGATCCATGCAACCTGGTCATCTGCCGGAACGGAGGCACCTGTGTGGACTCTGGATCCTCTGTGTACTGTCAGTGCATGTTTGGATGGAAAGGTGCACTTTGCTCTGAGAAAGTGTCGTTCTGTGATGCCGAACACATCCCACCGCCCTCCTGCGCTCGCGGCTCCACCTGTGTGCCCCTTCCTGATGGATACACATGCCAGTGCCCCCTAGGCTCTGCTGGACTCTTCTGCCAGCAAGCTGTATCTATCAGTGATCCTTTCTTCAGTGGCAATCAGTCATCTTGGATGTCATTTCCTCCCATCAATATAAGGCACAGAACCCATCTTCAACTGCAGTTTCAAACACTTTCACCAGAGGGCATCCTGTTCTACACCGCACGGTACTTGAGCAGTCGGTCTGGTGATTTCCTCAGCATATCCCTGTCAGCTGGATTTGTGCAGCTCCGCTATAATCTGGGAAACGAAACTATTGTATTACAGTCTCCAAAAGAGGTCGATGTGACTGGCATGAAGTGGCACACAGTGAAGGCTGGGAGAGAAGGCAACCGTGCCTTCCTCATTCTAGACGATGAAGCCGTGACCAGGAACTCTTCAGAGGGCACGAGCACTCTGGATGTTGGCACAAATATTTTCGTTGGGGGCGTGTCTTTACTGAATGCAGTGTCCCAGGATGCAACGGAGAAAGACCCGGTGGGGTTCACGGGCGGCATTCGAGAGGTCATAGTTAACGGGCATGACCTTGAGCTTACAGAGACAGGTGCGCTCGATGGAGTCAATGTTGGCGACTGGGACGGGACAGCGTGTGGGTATAAGGTTTGCATGAACAGTGGCTACTGCCATCCAGTGGGTCTTTCTTCATTCAGGTGTATTTGCCCCTCAACGTGGACCGGTTTACGGTGCCAACAGTCCGTTCACTGTGTCAACAGTCTTTGTCAACACGGTTCTCTCTGTGTCCATACGTCTGCTTCGTATTCATGTATGTGTTCTTTGGGATGGATTGGGACTTATTGTGACCAAAAAGTTATATTGAGGACTATAAAGTTTATTGGAAACTCATATTTGAAATACAAGGATCCAAAGTACAACTCTAGGAATTTGATGTACACTGAGGTTTCATTGAATTTTTCCACTTCAGCAGGGGACGGTTTGATTCTTTGGATGGGGAAAGCAGAAAGTGAAGACGATGATCATCTAGCGGTCGGGCTGCAGGACGGTTATCTGAAGGTTTCAGTCAATCTTGGTGAGAGAAATGCTGTTCCTCTTGTGTACCAAAACACATTCTGCTGTAATCACTGGAATTACCTGTCTATTATTCACAACCGAACTCTCATCCAGGTCTATGTGAATGAGGAAAGAGTCATTTTTGAAGACATTGACCCCTTTGAACAGTATGTAGCGGTAAATTATGGAGGGGTGATTTATTTGGGGGGGTTTGAATTAAATAGAGATGTGGCATCTGTTACATCTGGTGTATTTACTAAAGGGTTTGATGGGAGTATTAAAGATGTTTTCTTGTATCAGGACACCAGACAGCTGCAGTTTCATCAAACCAGTGAAGGTTTCAATGTCTATCAAGGTGATGAGTAGGAAAAATAATTGTGCTTATTGTTTCTGTCTCGATATTTGATTTTAGGTATTCACATCTAGAATAGAATACGCAATGAGTCTTATCAAATACACTAAATGACACAATCACAGTGCCAGTTTTCAAGAGGTGAAATCTGTTGTTTATTATTGGCATGATAAAATGATGCTGTCACAGAGATGTCAGGTTGTAGAAGTGAACCTTTATATAATCCAAAAATTCTTCAAAACACCCTCCATCTCAAAATCACCATGCATTTGTTGTTTGAATGAATGAAATGAAGAGATGCGAACACATGATAGCAGGACTGTTGCATATTTGTGCCTCTTATTGAAGGTCAGGTTGTTACATTATTTGCGATGTGTCCAGCTTTGTTGTTTATGCCACAAAGGCCTGTTCACTTTGACTTGATCTACTTTGAATCAAAACAACATGTTTTTTTAAGGAGGTATTTCTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_04386557_04402516.mRNA True 3267 mRNA 0.45 10 4386203 4402975

Neighbor

gene id symbol gene type direction distance location
CI01000012_04371425_04373907 NA coding upstream 12212 4371425 ~ 4373991 (+)
CI01000012_04285964_04292319 NA coding upstream 92428 4285594 ~ 4293775 (+)
CI01000012_04266133_04266370 NA coding upstream 118777 4266133 ~ 4267426 (+)
CI01000012_04209791_04237026 NA coding upstream 149043 4209026 ~ 4237160 (+)
CI01000012_04179776_04184166 NA coding upstream 201753 4179776 ~ 4184450 (+)
CI01000012_04424569_04425090 NA coding downstream 21594 4424569 ~ 4425756 (+)
CI01000012_04436374_04437448 NA coding downstream 32305 4435280 ~ 4437599 (+)
CI01000012_04488201_04489863 NA coding downstream 85226 4488201 ~ 4489897 (+)
CI01000012_04495631_04501066 NA coding downstream 92656 4495631 ~ 4501066 (+)
CI01000012_04514814_04539220 SYT16 coding downstream 111839 4514814 ~ 4539599 (+)
G71375 NA non-coding upstream 38823 4346804 ~ 4347380 (+)
G71305 NA non-coding upstream 146797 4239125 ~ 4239406 (+)
G71158 NA non-coding upstream 275927 4109941 ~ 4110276 (+)
G71156 NA non-coding upstream 279081 4106835 ~ 4107122 (+)
G71152 NA non-coding upstream 297961 4087869 ~ 4088242 (+)
G71238 NA non-coding downstream 78663 4481638 ~ 4505484 (+)
G71239 NA non-coding downstream 126381 4529356 ~ 4585221 (+)
CI01000012_04551570_04571150 SGPP1 non-coding downstream 141889 4551169 ~ 4571339 (+)
G71442 NA non-coding downstream 238562 4641537 ~ 4641848 (+)
G71208 NA non-coding downstream 303581 4706556 ~ 4710923 (+)
G70029 NA other upstream 1754818 2622478 ~ 2631385 (+)
G68725 NA other upstream 3701347 683523 ~ 684856 (+)
G68660 NA other upstream 3850250 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 4180429 193903 ~ 195676 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 773920 5176895 ~ 5180970 (+)
G71199 NA other downstream 1010275 5413250 ~ 5416785 (+)
G71218 NA other downstream 1132877 5535852 ~ 5538384 (+)

Expression


Co-expression Network