LOC103028649 (kctd6b,kctd6,LOC103028649,LOC108436290,LOC107671957,LOC107570288,LOC107737715)


Basic Information

Item Value
gene id LOC103028649
gene name kctd6b,kctd6,LOC103028649,LOC108436290,LOC107671957,LOC107570288,LOC107737715
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25182177 ~ 25184300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605949.2
GTGACCCAGCGCGGCTTGAGCTGAATGCTAACTCACTGCTGCAATGCACTCTCCTCTCTAAACATCAGGTCCGTCTTATCCATTCAAAACCCCGCCAGTGGGAGCAGATCTAAACAACCCATACCTGAACATTCTCTTGTGTGCCAGGCTGGTCTACATATCCAAATCAAATGGATAATGGGGACTGGGTGCATAGGaTGACTCACCCAGTCACCTTAAATGTTGGAGGTCACCTCTACACCACTTCCATCGCCACACTTCAGCGTTACCCCGACTCCATGCTGGGGGCTATGTTCCGTGGCGACTTCCCGACCACGAGGGATGCTCAAGGAAACTACTTTATCGACAGAGACGGGACACTGTTCCGCTACATACTAAATTTTCTTCGCACATCAGAGCTCACCCTGCCAAGTGACTTTGTGGAGACAGATCTTCTACGCAAGGAAGCTGACTTTTATCAGATCGAGCCTTTAATCCAATGCCTCAATGATCCGAAGCCACTGTACCCCCTAGACACCTTCGAACAGATGGTGGAACTGTCCAGCACCCGCAAACTTTCTAAGTACTCAAACCCAGTAGCCGTCATCATCACACAGTTAACCATAACCACAAAGGTCCACTCCCTGCTGGAGGGAATTTCCAACAACTTCACTAAGTGGAACAAACATATGATGGACACCAGAGACTGCCAGGTGTCCTTCACCTTTGGACCATGTGATTACCACCAAGAGGTGTCCCTCAGGGTCCACCTCATGGACTACATCACCAAACAGGGGTTTACAATTCGAAACACTCGAGTGCACCATATGAGCGAGCGTGCCAACGAGAACACAGTGGAGCACCACTGGACTTTCTGCAGGCTGGCCTACAAAGTGGAGGACTGACGGAGCCCAGAGATGAGACTGAATTATGTGGTTTATTTGATTGCTGCTGATGCCAATGCTATAACTTAATTAAGCTGTGTATATATGTCAGTGTTTGTTGTGAGACCAAACTCATCTATGAGGGGAAGGGAGCAAAGATGATGGAATTATAAACAAGTCAATGTTTGTATTGTTCATAAAAAAGATTTTCATTCTACTTTGTACCAATGTGATAAAGTGacattgaaatacatttacaGTTGGATTAGATAAACTGCCAGATATAGACAAACACTTCAAACACCTCAGATCAGTCATGTACGTCTAGTCAAAACGATACCGGAAAATAATTTTGTATGTTcactttagatttaaaaaatgctacatTTTGTACACCATGTGCAACATCAAGGTGTTGAAGACAtgcatgtttttaccatatatctgaagtattaaaatatcaacatgtcaaattaaaaatgaa
>XM_015605950.2
agagagagagaggcgcgtCACGTGACCCAGCGCGGCTTGAGCTGAATGCTAACTCACTGCTGCAATGCACTCTCCTCTCTAAACATCAGGTCCGTCTTATCCATTCAAAACCCCGCCAGTGGGAGCAGaTGACTCACCCAGTCACCTTAAATGTTGGAGGTCACCTCTACACCACTTCCATCGCCACACTTCAGCGTTACCCCGACTCCATGCTGGGGGCTATGTTCCGTGGCGACTTCCCGACCACGAGGGATGCTCAAGGAAACTACTTTATCGACAGAGACGGGACACTGTTCCGCTACATACTAAATTTTCTTCGCACATCAGAGCTCACCCTGCCAAGTGACTTTGTGGAGACAGATCTTCTACGCAAGGAAGCTGACTTTTATCAGATCGAGCCTTTAATCCAATGCCTCAATGATCCGAAGCCACTGTACCCCCTAGACACCTTCGAACAGATGGTGGAACTGTCCAGCACCCGCAAACTTTCTAAGTACTCAAACCCAGTAGCCGTCATCATCACACAGTTAACCATAACCACAAAGGTCCACTCCCTGCTGGAGGGAATTTCCAACAACTTCACTAAGTGGAACAAACATATGATGGACACCAGAGACTGCCAGGTGTCCTTCACCTTTGGACCATGTGATTACCACCAAGAGGTGTCCCTCAGGGTCCACCTCATGGACTACATCACCAAACAGGGGTTTACAATTCGAAACACTCGAGTGCACCATATGAGCGAGCGTGCCAACGAGAACACAGTGGAGCACCACTGGACTTTCTGCAGGCTGGCCTACAAAGTGGAGGACTGACGGAGCCCAGAGATGAGACTGAATTATGTGGTTTATTTGATTGCTGCTGATGCCAATGCTATAACTTAATTAAGCTGTGTATATATGTCAGTGTTTGTTGTGAGACCAAACTCATCTATGAGGGGAAGGGAGCAAAGATGATGGAATTATAAACAAGTCAATGTTTGTATTGTTCATAAAAAAGATTTTCATTCTACTTTGTACCAATGTGATAAAGTGacattgaaatacatttacaGTTGGATTAGATAAACTGCCAGATATAGACAAACACTTCAAACACCTCAGATCAGTCATGTACGTCTAGTCAAAACGATACCGGAAAATAATTTTGTATGTTcactttagatttaaaaaatgctacatTTTGTACACCATGTGCAACATCAAGGTGTTGAAGACAtgcatgtttttaccatatatctgaagtattaaaatatcaacatgtcaaattaaaaatgaa

Function

symbol description
kctd6b Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Orthologous to human KCTD6 (potassium channel tetramerization domain containing 6).
kctd6 Enables ankyrin binding activity; cullin family protein binding activity; and identical protein binding activity. Involved in negative regulation of smoothened signaling pathway and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol.

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD6 isoform X1

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21916 KCTD6; BTB/POZ domain-containing protein KCTD6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605949.2 True 1347 mRNA 0.44 3 25182198 25184300
XM_015605950.2 False 1278 mRNA 0.44 2 25182177 25184300

Neighbor

gene id symbol gene type direction distance location
LOC103028342 abhd6b,LOC108436291,LOC107712730,LOC108275644,LOC107699577,LOC107737716 coding upstream 803 25176018 ~ 25181374 (+)
LOC103027821 NA coding upstream 8037 25135664 ~ 25174140 (+)
LOC103030657 LOC108436320,LOC108276397 coding upstream 49435 25122139 ~ 25132742 (+)
LOC103031199 atp6ap1lb,LOC103031199,LOC108436292,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC105890636,LOC108275547 coding upstream 67129 25101215 ~ 25115048 (+)
LOC103032751 LOC108436294 coding upstream 161081 25016785 ~ 25021096 (+)
LOC103029812 LOC108436316 coding downstream 21488 25205788 ~ 25218003 (+)
LOC103021519 tnnc1b,LOC108276054,LOC107671989,LOC107568847,LOC107593406,LOC105890642,LOC103374679 coding downstream 356461 25540761 ~ 25544523 (+)
LOC103044939 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108434838,LOC107737591,LOC107568845,LOC101472191,LOC102782874 coding downstream 602729 25787029 ~ 25797553 (+)
LOC103044421 LOC103044421,LOC108434847,LOC108276484,LOC103384678 coding downstream 615129 25799429 ~ 25802413 (+)
LOC103043212 slc35c2,col20a1,LOC108275935,LOC107712700,LOC107699598,LOC107737588,LOC107672031 coding downstream 623678 25807978 ~ 25862859 (+)
G134477 NA non-coding upstream 340939 24840943 ~ 24841238 (+)
G134476 NA non-coding upstream 341829 24840129 ~ 24840348 (+)
G134475 NA non-coding upstream 342242 24839305 ~ 24839935 (+)
G134462 NA non-coding upstream 377381 24804059 ~ 24804796 (+)
G134434 pard6g,LOC108436329,LOC107562464,LOC107702404,LOC107754812,LOC107581070,LOC107672872 non-coding upstream 425698 24751925 ~ 24756479 (+)
G134615 NA non-coding downstream 8291 25192591 ~ 25192957 (+)
G134616 LOC107737613,LOC107671963,LOC107560871,LOC108436318,LOC107570281 non-coding downstream 8910 25193210 ~ 25195840 (+)
G134617 NA non-coding downstream 11661 25195961 ~ 25197451 (+)
G134610 NA non-coding downstream 33857 25218157 ~ 25573608 (+)
G134630 haus7 non-coding downstream 127630 25311930 ~ 25317411 (+)
trnae-uuc_18 NA other upstream 371177 24810929 ~ 24811000 (+)
LOC103036968 LOC108436332 other upstream 520643 24605649 ~ 24661534 (+)
G134426 NA other upstream 550047 24621908 ~ 24632130 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 679167 24489905 ~ 24503010 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other upstream 701805 24457876 ~ 24480372 (+)
smim4 smim4 other downstream 1516 25185816 ~ 25190306 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other downstream 53171 25237471 ~ 25296336 (+)
emd LOC108436312 other downstream 116481 25300781 ~ 25306348 (+)
G134632 atp2b3 other downstream 135841 25320141 ~ 25324699 (+)
cfap126 cfap126 other downstream 242434 25426734 ~ 25431174 (+)

Expression


Co-expression Network