CI01000012_04926292_04930302 (TMX1)


Basic Information

Item Value
gene id CI01000012_04926292_04930302
gene name TMX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4925496 ~ 4930474 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_04926292_04930302.mRNA
ATACATAAATTCATTAATCATACAATCAAAAATAATTCATAAGTGTCAGGAAGTGGGTTAAATTATGTTTTAAACCTTTTCAATGCGTCATGACGTCAATGACGCAGCGCCGCCCATCAGCAGCACGTGGGAGTGGAGGCGGAAGCGGAAGGGAAGCAGTGGGCGCTGAAACATGGCGTGCACATACACACGCAGAGTCAGGGAGATGACAGCTTTCGCGTGTGTATTTTCTGCTCTTATTGCAGCATGTGTGATGCTGCAGCCCGCATCGGCCAAGCCGGGTCATTTAAGAGTAATCACAGATGGAAACTGGGAGGAAATCCTGACAGGAGAATGGATGATCGAGTTCTTTGCTCCATGGTGTCCAGCCTGTCAGCAGCTCCAGCCCGTGTGGAATGAGTTTGCAGAATGGGGAGAAGATTTGGGAGTGAACATTGCCAAAGTGGATGTCACCGAGCAGCCAGGTTTGAGTGGGAGGTTTATCATCACAGCTCTCCCAACTATCTACCACTGTAAAGATGGTGTGTTTCGAAGATATCAAGGAGCCCGATCTAAAGAAGACTTCCTGAGCTTCATTGATGAGAAGAAATGGCAGAGCATAGAGCCGGTCTCTTCCTGGTTCGGCCCCTCTTCCTTCATGATGAACGCAATGTCAGCCCTCTTTAAGTTATCCATGTTCATCAGGCATTGCCATAATTACTTAACGGAGCAGCTGGGCATCCCGGTTTGGGGCTCATATGGGATATTTGCTCTGGCAACACTCGTCTCAGGATTGGCTCTTGGATTGGTGCTGGTTTTCGTCGCAGATTTTGTGTTCCCATCACGACGATTTGCACCAGATTATCACCACAGGAAACTGCCTGCGGGGCAAGTGCGTCTCCTGCAGCAATCTGAAGATGAGCAGGAAGCAGATGGTGAGGAAGAGGATGATGAAGACGAGTACGGAGAAAAGACTGAAGAGTGGCGGCGAGTGGGCGGAGCCGATGCTCTCAGAAGAAGAGGTGTGGGTGTGCCGGAGGAGGACACCTAGAGGACTGGAGAGGAACTGCCTCTTGCTCACTGTGCACAAAATCACCACACAAACCACGTCGCTACGGCAATGCCCTCATGTGCGGCCATGGCAGCATTCATTGAGCTTGATGACATCACATATGATGTCATAGCTCCCTTCTGAAAGATTGATGTGGTTGTGCTTTTCTCTCTATCTTGCCGCAAGTTTGTGTGTTTTCTCTTTTCCAACTGTCCAGTTTTAATTCTTACACTCCTTGCTATGCAGTATCTCTAGATTGTGTGTGTTGGAGCAGTGTTTCCCAAAGCTGTTCTGGGGACCCCCAACCACTGCACATTTTGGATGTCTCCCTCATCAGTAACACCCCATTAGAGTCTTGCAGTCTCTACTAATGAGCTGATTAGTTGAATCAGGTGTGTCAGATGAGGGAGACATCAAAAATATGCAGTGGTAGGGGATCCCCAGGACAGCTTTGAGAAGCACTTTGCTAGAGGAATATTAGAACCTACTTTAAGGAATTTCACCGACACACAGCTGCAATATTCCCCTTACAAATACTGAGCAAACCAAGATCAAACAACAACCTCACTGTGAATCTGTAGTTGTAAATGAGGCTTTTGGGAATATGAAAGGTTTTGTGCTTTACTTTGTAAATATTTTATTATTTGAGCTTTTTGGATGCCTGTTCTATGAAGTTGGAATGTTCAGTTTGCTGTTTTAAATGTTTTTTCTTCCATGCAGAGATCAGCTTCACATGTTTTGCGTTTAGTTTTTTGTGTTATTGAAGCTTTGGGAGACTAGAAAATGCCTGAATTAA

Function

symbol description
tmx1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMX1 (thioredoxin related transmembrane protein 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_04926292_04930302.mRNA True 1826 mRNA 0.46 8 4925496 4930474

Neighbor

gene id symbol gene type direction distance location
CI01000012_04879477_04890031 FRMD6 coding downstream 35465 4879440 ~ 4890031 (-)
CI01000012_04839741_04854323 NA coding downstream 70497 4839475 ~ 4854999 (-)
CI01000012_04706769_04709074 GPHB5 coding downstream 216422 4706701 ~ 4709074 (-)
CI01000012_04404769_04419096 PHF3 coding downstream 506400 4404326 ~ 4419096 (-)
CI01000012_04375448_04378813 NA coding downstream 546092 4375358 ~ 4379404 (-)
CI01000012_05022143_05030697 ATL1 coding upstream 91269 5021743 ~ 5030697 (-)
CI01000012_05079456_05083333 ATP5S coding upstream 148773 5079247 ~ 5083333 (-)
CI01000012_05091184_05092014 NA coding upstream 160547 5091021 ~ 5092014 (-)
CI01000012_05112839_05116264 NA coding upstream 180931 5111405 ~ 5116264 (-)
CI01000012_05118797_05123143 NA coding upstream 187858 5118332 ~ 5123143 (-)
G72141 NA non-coding downstream 8827 4916436 ~ 4916669 (-)
G72139 NA non-coding downstream 12309 4912904 ~ 4913187 (-)
G72135 NA non-coding downstream 18157 4906898 ~ 4907339 (-)
G72089 NA non-coding downstream 47085 4876403 ~ 4878411 (-)
G72130 NA non-coding downstream 55028 4870204 ~ 4870468 (-)
G72099 NA non-coding upstream 28232 4958706 ~ 4966350 (-)
G72078 NA non-coding upstream 36276 4966750 ~ 4976926 (-)
G72087 NA non-coding upstream 76148 5006622 ~ 5008697 (-)
G72174 NA non-coding upstream 137288 5067762 ~ 5068870 (-)
G72114 NA non-coding upstream 237048 5167522 ~ 5168375 (-)
G72068 NA other downstream 145364 4776220 ~ 4780132 (-)
G71898 NA other downstream 390824 4533530 ~ 4534672 (-)
G70774 NA other downstream 2058604 2866508 ~ 2866892 (-)
G69562 NA other downstream 3549198 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 3774298 1135676 ~ 1192154 (-)
G72204 NA other upstream 363299 5293773 ~ 5302206 (-)
CI01000012_05414096_05416676 TTC9 other upstream 433168 5413369 ~ 5416780 (-)
G72294 NA other upstream 532366 5462840 ~ 5465857 (-)
G72629 NA other upstream 1216537 6147011 ~ 6147494 (-)
CI01000012_07356934_07358497 NA other upstream 2424778 7356863 ~ 7358612 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006156 tmx1 coding NC_007124.7 CM002897.2 36923052 ~ 36934915 (+)