CI01000012_05022143_05030697 (ATL1)


Basic Information

Item Value
gene id CI01000012_05022143_05030697
gene name ATL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5021743 ~ 5030697 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05022143_05030697.mRNA
GGTCTTTTGGGGATAAAAACGTGTATGACTGGAGCTCAGAGGAGGAGGAGACAGACGGACGGGCGCGTCCAGTGCAGGTGTTGGTAGTGAAGGATGACCACACATTTGAGCTAGACGAGACGGCGCTTAGTAAGATCCTGCTGGCTGAAGAGGTCAGAGACAGAGAGGTGGTGGCCATCTCCGTGGCAGGAGCCTTCCGCAAGGGCAAATCCTTCCTCATGGACTTCATGCTACGTTACATGTACAGCCAGGCCAGTGATCAGTGGCTGGGGGACCCCGAGGAGCCACTGACGGGATTCTCATGGAGAGGAGGGTCAGAGCGGGAGACCACTGGCATTCAGATCTGGAGTGAGGTCTTCCTGGTGGACAAACCAGATGGCAGCAAGGTGGCAGTGCTGCTAATGGACACACAGGGGACCTTCGACAGCCAGTCCACTCTCCGTGACTCAGCTACCGTATTTGCCCTCAGTACTATGATCAGCTCAATGCAGGTGTATAACATATCTCAGAATGTTCAAGAAGATGATCTTCAGCATCTGCAGCTTTTCACTGAATACGGCAGACTGGCCATGGAAGAAACATTCCTCAAACCATTTCAGTCGATGATCTTTCTGGTGCGGGACTGGAGCTTTCCATACGAGTTTCCCTACGGACAAGAAGGAGGAATGAAATTCCTGGAGAAAAGATTAAAGGCAAATATATATGGAAAGATTTCAGAGAATCAACATGAGGAGCTGCAGAACGTAAGGAAACACATCCATTCCTGCTTCACCAACATCTCCTGCTTCCTCATGCCACACCCGGGACTCAAGGTGGCCACAAACCCACACTTTGATGGCAGATTGAGGGAGATCGATCAAGAGTTTATCAATAACCTCAAAGTGCTTGTTCCTTGGTTACTACGCCCCAAAAACCTGGATGTGAAAGAGATAAATGGAAGCAAAATCACCTGTCGTGGACTCCTGGAGTACTTCAAGGCCACTGCTGAAGCCAATAATCTGGCTGCAGTGGCTGCAGCTAAAGATCTATACAACAGGAAGATGGAGGTGGTGAGCGGAGGAGATCGGCCTTTCCTCGCCCCAAGCGAGCTACAGGCACGTCACTTGGACATCCGAGAGGAGTCATTGGCATTGTTTCGCAGTGTGAAGAAAATGGGCGGGGAGGAGTTCAGCCGGCGCTACCTGCTGCAGCTGGAGACGGAGATAGACGAGTTGTTTGTGCAGTACATCAAACACAACGACTCCAAGAACATCTTCCACGCGGCACGCACACCTGCGACACTGTTCGTGGTGATCTTTGTGATGTATGTGGCCGCAGGGATCACGGGGTTCGTGGGCGTCGACGTCATCGCAAGCGTCTGCAACATGGTGCTGGGCTTTGCGCTCATCACTCTGTGCACCTGGGCGTACATCCGCTACTCAGGAGAATACAGAGAACTGGGCGCAGTCATTGACCAGGTGGCCGGAGCGCTGTGGGATCAGGCTCTGTATAAGCTGTACAGTGTAGCGGCAAACCACAGGCAGTTGTATAATCATGCCTTCCCAGGACACCAGACTGGTCAACCGCCTGAGCAGGACAAGAAACAAAACTGACCCCACACAGTTTCACGCAGACGCACTGTGGACAGTGACAGTGGAGCGTACAGTCAGAGAGAGAAAGAGGCATGGGACTGTTCAATGCTTTACTGCTACAGTAGGAACATATCGCCACAATCACCCACCACTGCAACATCCTGCACCTACAGCTCAGGCCCACAGTCAGACGGCGAGGAGAATCAACTGAAAAGTGTCTCAAAAGATTCAGTCTGACTGTGCCATTTGCGCCTGCAGTCGAAAATCACGGTATTAGTTCTGACATTTATATCTGAATCACCATTTTACCATCTTCTCACTGTAAATACTGTTTCTCTCTCTGACACTCACATGAAAGGAGTCTGTTCTTATTTTGTAATGGATGTTGTATGTTGAGTTCAGTGCTTTATAAGGGAATAAA

Function

symbol description
atl1 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within axon guidance; determination of dorsal identity; and negative regulation of BMP signaling pathway. Located in late endosome. Is expressed in brain; primary motor neurons; and spinal cord neural tube. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D and hereditary spastic paraplegia 3A. Orthologous to human ATL1 (atlastin GTPase 1).

GO:

id name namespace
GO:0005770 late endosome cellular_component

KEGG:

id description
K17339 ATL; atlastin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05022143_05030697.mRNA True 1992 mRNA 0.51 11 5021743 5030697

Neighbor

gene id symbol gene type direction distance location
CI01000012_04926292_04930302 TMX1 coding downstream 91269 4925496 ~ 4930474 (-)
CI01000012_04879477_04890031 FRMD6 coding downstream 131712 4879440 ~ 4890031 (-)
CI01000012_04839741_04854323 NA coding downstream 166744 4839475 ~ 4854999 (-)
CI01000012_04706769_04709074 GPHB5 coding downstream 312669 4706701 ~ 4709074 (-)
CI01000012_04404769_04419096 PHF3 coding downstream 602647 4404326 ~ 4419096 (-)
CI01000012_05079456_05083333 ATP5S coding upstream 48550 5079247 ~ 5083333 (-)
CI01000012_05091184_05092014 NA coding upstream 60324 5091021 ~ 5092014 (-)
CI01000012_05112839_05116264 NA coding upstream 80708 5111405 ~ 5116264 (-)
CI01000012_05118797_05123143 NA coding upstream 87635 5118332 ~ 5123143 (-)
CI01000012_05131253_05139664 CNIH1, MGC85215, CNIH1.S coding upstream 100333 5131030 ~ 5139675 (-)
G72087 NA non-coding downstream 13046 5006622 ~ 5008697 (-)
G72078 NA non-coding downstream 44817 4966750 ~ 4976926 (-)
G72099 NA non-coding downstream 55393 4958706 ~ 4966350 (-)
G72141 NA non-coding downstream 105074 4916436 ~ 4916669 (-)
G72139 NA non-coding downstream 108556 4912904 ~ 4913187 (-)
G72174 NA non-coding upstream 37065 5067762 ~ 5068870 (-)
G72114 NA non-coding upstream 136825 5167522 ~ 5168375 (-)
G72111 NA non-coding upstream 143424 5174121 ~ 5174733 (-)
G72073 NA non-coding upstream 146885 5177582 ~ 5181057 (-)
G72208 NA non-coding upstream 202667 5233364 ~ 5234207 (-)
G72068 NA other downstream 241611 4776220 ~ 4780132 (-)
G71898 NA other downstream 487071 4533530 ~ 4534672 (-)
G70774 NA other downstream 2154851 2866508 ~ 2866892 (-)
G69562 NA other downstream 3645445 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 3870545 1135676 ~ 1192154 (-)
G72204 NA other upstream 263076 5293773 ~ 5302206 (-)
CI01000012_05414096_05416676 TTC9 other upstream 332945 5413369 ~ 5416780 (-)
G72294 NA other upstream 432143 5462840 ~ 5465857 (-)
G72629 NA other upstream 1116314 6147011 ~ 6147494 (-)
CI01000012_07356934_07358497 NA other upstream 2324555 7356863 ~ 7358612 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000279 atl1 coding CM030141.1 CM030141.1 9427499 ~ 9439336 (-)