LOC103023305


Basic Information

Item Value
gene id LOC103023305
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 17564407 ~ 17589725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677282.1
tctctttctccagccTCTATTTTTGTTCTGAATCTCCTCCTCAGTGCTCAGAGTGAAGGCTGGCAGTGTTGTGAGGGGTAGTGTGGGATGATGCAGGGGATCAGACCTGGTCTAGCCTCTGTTCTGctggtcagtgtgtttttgggaATCCAGGCATCTGGGACTACCTTCCGACCTCATAACTGCACACTGCGGTGTGTTCAGCAGGAAACTCCAGGATGTGAGTATTGCAGGATCAGTAAGGAAGATGTCCAAAGGACACTCGGTTTCTCATCAGCTGGCCTCTTTACAGGATGTGTGCCATGGCCATGTTCCTCTTTTTTAGGCCAGCAGACTCCCGAGGTTTGCCAGCACTATGTTAACGCTCCGGAGAACATCACCATTGAGTTTGTGGATAATCCAAATCCGAAATATGATACAGCTGTTGTGTCCTGGAGTCCTAGCAAATATGGTATTGCTTTCCTGAGAGGATTCCAGGTTACACTGCAGACTTTGGGTGGAACAAAGACCTTCTGCCAGCTCTTCCTCCTTCAAAACAATCTGTCATTATCTGCCGCACATTCTCAAAGCGTGTATTACTCAGACCCGTTCTCGGAGCTCTCTCTGGGCACCCAGTACGCTGTGACAGTGATTGCCATTCCTGTTCCTGAGCCATGGGATAAATTCTACGACAGCAAACAGTTCACAACACGCACGTGCCCTGAGAAAAACGGCCTGGAGAACTGCAAATCTGACTGGTATCCCAGGTATATTGAAGTTCATCAAGATAATCAGGACATTGTTGTGACTTTCAACCTGGCACCCGTGAACCTGGGCATCCGACGCTACTTTTCAGCTTGCTTCGGCGGGGGCGTACGCAGAGACAAAAGCATTCAACCAgaCTTCAGAGTAAACAGTACTCATCACACTTACCGCTTACCCGATCTCCATAAAGGAACCAACTACACCTGTGAGATTGCTGCAGATGTTGTGGATGCAGTTAGGAAAACGTTCTTTGTTCAAGTCCAGCATCATTCCGAAGAACCATGGGCTTTACATAATAAGGGTCTACCTTTGGCTGTAATCCTCTGTGTAAGCGTCCTGATAGCCACCTGTTTAACAGCTATCTCTATTACCCTCTGCCAAAAAAAGCGACTGAAGAAAAAGGCAGTAAAGATGGAGATACCACAAGAGAGAACTGAAGAATATTATGACAAACTCCTGGATGAGCCTCACTGTGTGACACTAAACTCCAGTGCCCGCCCCCCTCGCCTCCTGATTTGCTATTCCAGTAATGACGGTCCTGTCCACATAAAAGTCGTCTTACAACAGGCAACCTTTCTGCAAAGGCACATGGCGACTCAGGTACACCTGGACCTGTGGGATGCATTAAGCATCATGGAGGAGGGGGATCTGGGCTGGTACTGCAGGATGATGAAGGAGAGTGACTTTGTGATGGTCATCTGCTCTCGGGGTCTCAACCAGAATCCGCAGAGATGGAGAAACCAGGAGGAAGACGATTCAGGCGATTCAAACCCCACCATTTTGGCCATCACAGCCTTAATCGGGGAAGAGATATACCGAGCTAAAGCTCTGCAGCAGGATCTCTCCAAATACATGACTGCCACATTCGAGTACTCCAAGGAATCTGACATCCCATCCATTTTAAACTTGGTCTCAAGTTATGCCCTCCCCAGAGACCTGCCGCTGCTGTTCTCTCACCTGCACAGAGTGGCCCTGCAGAGGCCTGGAGCGTTCCTGCAGGTGGAGAACATCTCCGAGAACAACTACTCCAGACTGcctgctggagcagcgttaTCCATGGCTATTCAGGAGGCCAAGAGTCTGATCACTGCCTAGAGACAGGGTCATGTGATCGGAGAACTCTGGGATCCAGAGCCAGTCATCCAGTAAGCTAATGCTCGTCTGCGTTCGGCAGGTTTGCATCAGATCTGTGAAGACATgctgtagggctgcaacgattagttaaCATACACCAATTTTAAGTGTTGACTAATTAGggctgaaatatatatatatatatataaaacaacgtACCACAATTTTTGATCCTGGGTTCTagctacagtcatatgaaaaagtttgggcacccctattaatattaatcatttttagttctaaatatttgggtgtttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677282.1 True 2137 mRNA 0.48 12 17564407 17589725

Neighbor

gene id symbol gene type direction distance location
fam50a fam50a coding upstream 2391 17543782 ~ 17562016 (+)
LOC103046182 NA coding upstream 60343 17498763 ~ 17504064 (+)
cs cs,LOC107707042,LOC107697968,LOC107671863 coding upstream 77408 17471482 ~ 17486999 (+)
LOC103024256 LOC108425513,LOC107671862,LOC107697970,LOC107756420 coding upstream 103574 17376371 ~ 17460833 (+)
LOC103047606 si:ch211-210c8.6,LOC108425517,LOC106567173 coding upstream 215601 17342501 ~ 17348806 (+)
sars sars,LOC107671868,LOC107697960 coding downstream 11399 17601124 ~ 17627589 (+)
LOC103044854 LOC103044854,LOC108425484 coding downstream 41046 17630771 ~ 17732521 (+)
LOC103026658 LOC108425505,LOC107715025,LOC107671876,LOC106572368,LOC105022778 coding downstream 214358 17804083 ~ 18021997 (+)
wdr63 NA coding downstream 487925 18077650 ~ 18125936 (+)
LOC111194038 NA coding downstream 624160 18213885 ~ 18214673 (+)
G132588 NA non-coding upstream 96193 17466270 ~ 17468214 (+)
G132586 NA non-coding upstream 188745 17372066 ~ 17375662 (+)
G132585 NA non-coding upstream 200275 17362582 ~ 17364132 (+)
G132547 NA non-coding upstream 339752 17222902 ~ 17224655 (+)
G132550 NA non-coding upstream 375923 17187875 ~ 17188484 (+)
G132718 NA non-coding downstream 139592 17729317 ~ 17734305 (+)
G132741 NA non-coding downstream 155236 17744961 ~ 17746840 (+)
G132750 NA non-coding downstream 181629 17771354 ~ 17771564 (+)
G132752 NA non-coding downstream 184010 17773735 ~ 17773996 (+)
G132767 NA non-coding downstream 311548 17901273 ~ 17902022 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 40054 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 54592 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 1826626 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 2098322 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 2166838 15364390 ~ 15397569 (+)
G133076 NA other downstream 1453769 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 1757743 19347468 ~ 19360891 (+)
G133246 NA other downstream 2533665 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 2703438 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 3177191 20766916 ~ 20783861 (+)

Expression


Co-expression Network