LOC103026658 (LOC108425505,LOC107715025,LOC107671876,LOC106572368,LOC105022778)


Basic Information

Item Value
gene id LOC103026658
gene name LOC108425505,LOC107715025,LOC107671876,LOC106572368,LOC105022778
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 17804083 ~ 18021997 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677283.1
GGGAGCGGGACCGGAGGCGGCGCTGCGGGGACAGTACGCGGAGCGGGCCGGGACTGTGAGCATGGGGAGGATAGCGGATCGGACCGGACCGGACTGACCGGGCGCGAGTATCGGCCGTCTTGCTGTGGGTAGCCGTGTTGAAGATTGCAGATTGCAGCTCTCGACTTgcgggagagaaagagagcattgAAGACTCTGGATCAATACGACTCTCTTCTTTTTCACCTCAAGCTGGCGTAGACCGTTTTTTCAATACGACATCGGGAAGGTGAAATCCACCCACCAGACATGCTGCGGTGCAGGAGGGGGGCTCCCCCCTCACCAATACCCAGGGCCTTCCAACTCCTACTCTTCCTTTTTTCCCTCTGTCAAAGGGGTGAAGCGTTAGAATCCACCCTGCACTCCTTCCAGACCTTGCAGACGTTCCAAGCGTTCCAGACGTTTGCCCCTGCCGAGGGTGGACTTGCTCACATGGTCATCCACAGTAAAACGGGTGAGGTTTACTTGGGTGCCGTTAACTGGATCTACAAGCTCTCCAGCAACTTGACCAAGCTGCGTAGCCATGTGACCGGGCCAGTGGTCGACAATGAGAAATGTTACCCTCCGCCCGGAGTCCAGTCCTGCCCGTACGATCTCCTACAAACCAACAACGTCAACAAGCTTCTGCTGCTGGACTCAGGGCAGAACCGGCTTATTGCCTGCGGAAGCACATCACAAGGCATCTGCCAATTTCTGCGATTGGACGACCTCTTTAAGCTGGGTGAACCTCACCATCGCAAGGAACACTACCTCTCCAGTGTGTCCGAAGCAGGTACCATGTCTGGAGTGGTGGTCAGCGGCCCCCAGGGTATAAGCAGCGGTAAACTCTTCGTAGGAACGCCTATCGAAGGCAAATCGGAATACTTCCCAACTCTTTCCAGTCGCAAACTGATGGCCAACGAAGAGAATGCTGATATGTTCAGCTTTGTGTATCAAGACGAATTCGTCTCCTCACAGCTAAAGATCCCTTCGGATACACTCTCCAAGTTCCCCATGTTTGACATCTACTATGTTTATGGTTTCAACAGCGAGCAGTTCATCTATTACCTGACCCTTCAGCTGGACACGCAGCTCACGTCCCCTGACGCAAGCGCCGAGCAGTTTTTTACCTCTAAGATCGTACGGCTTTGCGTGGACGACCCCAAGTTTTACTCGTATGTGGAGTTCCCCATCGGATGCACCAAGGACGGAGTGGAGTACCGGCTTGTCCAGGACGCCTATCTTACCAGGCCTGGTTCCAAACTGGCGAGGTCGCTCGGTATCTCCGAGCGGGAGGAGGTGCTGTTCACCGTGTTCGCTCAGGGCCAGAAGAACAGGGCCAAGCCGCCCAAGGAGTCGGCCTTGTGCCTGTTTACCATGCGCAAAATCAAGGAGAAGATCAAGGAGCGCATTCAGTCCTGCTACCGGGGCGAAGGAAAACTGTCCCTGCCCTGGCTGCTCAACAAGGAGCTGGCCTGCATCAATTCACCTCTGCAGATCGAAGACAACTTCTGCGGTCAGGACTTTAACCAACCACTGGGTGGAACCACCACCATCGAGGGAATCCCGCTCTTTCTGGATAAGGATGATGGACTGACCTCGGTGGCGGCCTATGACTACCGGGGACACACTGTTGCTTTCGCTGGAACCCGTAGCGGCAGGATTAAGAAGATCGTGGTGAACTCCGTCTACCAGCCGGCTCAGCTGTATGAGAACGTGGCTGTGAGTGAAGGAAACCCCATTCTGAGAGACATGCTCTTCAGCCCCAACTACTTGTATATATACACCCTTACAGAGAACGAGgtgagcAGGGTGCCGGTAGAGAGCTGTGAGCAGTATACCAGCTGTAATGAGTGTCTGGGATCTGGAGACCCCCACTGCGGCTGGTGTGTTTTACACAATACATGTTCCCGTAGAGACCGGTGTGAGAGATCTGAAGAGCCCCTGCGCTTTGCTTCTCATGTGGGGCAGTGTGTCAAACTCAGCGTCCAACCCAACAACGTCTCAGTCACCATGTCTGAAGtgcagCTGGTGCTGCAGGCCCAGAACGTACCCAGTCTGTCTGCGGGAGTGAACTGCTCGTTTGAGGATTACACAGAGACCGAGGGGCACATCGTCGGGGGACACATCTTCTGTCTCACTCCCACCACGCGTCAGATAGCCCCCATCACACGCAGCAAGGGTGACAGGCATGTAATGAAAGTTTACCTGAAGTCGAAAGAGACGGGGAAGAAGTTCGCCAGTGTGGATTTCGTCTTCTACAACTGTAGTGTCCACCAGTCAtgtctctcctgtgtgaatggcTCTTTCCCCTGCCACTGGTGCAAATATCGCCACATGTGTACCCACGACGCCAACGACTGCTCCTTCCAGGAGGGCAGAGTTAATACGTCAGAGgaGTGTCCTCAGATCATGCCCACCACGCAGATCCACATCCCAGTGGGTGTTATAAAGCCCATTACCCTGCTAGCCCAGAACCTTCCGCAGCCACAGTCGGGTCAGAGGAACTACGAGTGCATCTTTAACATCCAGGGCAGAGTTCACAGTGTCACCGCTCTGCGCTTTAACAGCACCAGCATACAGTGCCAGAAGACCATGTATGACTATGATGGCAATGACATCAGTGATCTGCCGGTGGAGCTGTCGGTCGTGTGGAATGGAGACTTTGTCATTGACAACCCTTACAATATTAAAGCACACCTGTATAAATGCTATGCTCTGAGGGACAGCTGTGGGATGTGTCTGAAGGCTGACCCGCGGTTCGACTGCGGCTGGTGTGTTCAGGAAAAGAAGTGCTCTCTCAGACAGGAGTGCGCTCCGGCAGAAAGCACCTGGATGCACCCCAGCATCAGCAACAGCCGCTGTACACACCCCAAAATCACCAAGTTGTTTCCAGAGACGGGTCCACGGCAGGGCGGAACAAGGCTCACCATCACTGGAGAGAACCTGGGTTTGCAGTTCACAGACATCCAGAACGGAGTCCGGCTGGGAAAGGTGCCATGCATTCCTGTAGAGGAGGAGTACATTAGTGCAGAGAGgattgtGTGTCAGATAAACGATGCTACAGGGTACCGTGTGCAGGAGGCTCAGGTAGAGGTGTGCGTCAGAGACTGTCTACCAGACTACAGAGCACTGTCACCACGAGGATTCACTTTTGTGACCCCGTTCTTCACTCGAGTGCAGCCCTCTCAGGGTCCTCTCTCTGGGGGCACCAGGATCACCATTGAGGGAAACCACCTGAACGCTGGCAGCTTAGTGACCGTTAACATCGGTCGCCAGCCTTGTCGCTTTAAGAAGCGGAGTGCTAAAGAGATCGTATGTGTGACTCCAGCGGGGGGGAACCCAGGAAGCACTCCGGTGATGGTGGACATCGATGCTGCAGAGTTACGAAACCCTGAAGTGAAGTTCAACTACACGGAAGACCCTACGGTTCTGCACATAGAGCCGGACTGGAGCATCGCCAGtggtgGAATTCCTCTGACCGTCAGTGGTACCAATTTGGCCACCATCAAAGAACCCAAGATTCGAGCCAAGTATGGTACTGCTGAATCTTTCCATAACTGCACAGTCTATAATAACTCAGTCATGGTGTGCTTGGCACCGTCTGTGGCTCACTCTGAGCGAGGCATTGCGGAGAGCGGCAGCAGACCGGACGAGATTGGTTTCTACATGGACGACGTCGATGCTCTGATAGTGGTGAACGAGAGCTTCAGCTACTTCCCTGATCCTGTGTTCGAGCCGCTCAGTCCCACCGGCGTCCTGGAGTTAAAACCTGCCTCTCCTCTCATACTCAAGggtCGGAACCTGTTTCCAGCAGCGCCGGGAAACTCCAGACTGAATTACACAGTGCTGAtcggagagacgctgtgtgttCTGACCCTGTCTGAGACTCAGCTGCTGTGTGAATGGCCTAACCTCACAGGCCAGCACAAAGTTACCATCCAGGCAGGAGGGTTCGAGTACTCCCCAGGCACACTGCAGATCTATCGAGACGGCCTCCTCACCCTGCCAGCGATCGTGGGGATCGGAGGAGGTGGAGGACTCCTCCTGCTGGTGATCATCTTTGTTCTGGTTGCGTATAAACGCAAATCTCGAGACGCCGACCGCACTCTGAAGCGGCTGCAGCTGCAGATGGACAACCTGGAGTCCAGAGTGGCCCTGGAGTGCAAAGAAGCGTTCGCAGAGCTCCAGACCGATATCCATGAATTAACTCAGGAGCTGGACGGAGCTGGAATACCTTTCCTGGACTACAGAACATACGCCATGAGAGTACTATTTCCTGGCATCGAGGATCACCCAGTGCTCAAGGAGATGGAGGTGCAGGCTGATATGGAGAAGGCTCTGGCTTTGTTCGGTCAGCTCCTGGCTAAGCAGCACTTCCTGTTAACGTTTATCCGCACTCTGGAGGCACAGCGCTCCTTCTCCATGCGAGACCGAGGCAACGTGGCCTCCCTCATCATGACCGCTCTGCAGGGGGAGATGGAGTACGCTACAGGAGTCCTCAAACAGCTGCTGTCAGACCTTATAGACAGAAACCTGGAGAGCAAGAATCACCCCAAACTGCTGCTGCGCAGAACAGAATCTGTGGCTGAGAAGATGCTTACAAACTGGTTTACCTTCCTCCTGTACAAGTTCCTaaagGAGTGTGCTGGGGAGCCTCTGTTTATGCTGTACTGTGCTATGAAGCAGCAGATGGAGAAAGGCCCTATAGATGCCATCACAGGAGAGGCTCGCTACTCCCTCAGCGAAGACAAACTCATCCGTCAGCAGATTGACTATAAAACACTGACTCTGCACTGTGTGAACCCAGAAAATGAGAGCGCTCCAGAGGTGTCTGTGAAATGCCTGAACTGTGACACCATCACACAGGTGAAGGAGAAGCTGTTAGATGCTGTGTATAAAGGAAGTCCCTACTCTCAGAGACCCAAAGCTGGAGACATGGATATGGAATGGCGGCAAAGCAGAATGGCCAGAATTGTTCTGCAGGATGAGGACGTTACTACTAAAATCGATAATGACTGGAAACGACTAAACACTTTATCACACTATCAGGTTACAGATGGATCAGTTATCGCTCTGGTGCCGAAGCAGAACTCGGCCTACAACATCTGCAACTCCTCCACCTTCACCAAGTCACTCAGCAGATATGAGAGCATGCTGAGAACAGCGAGTAGTCCAGACAGCCTCCGCTCCAGAACACCGATGATCACCCCTGATCTAGAGAGCGGCACCAAACTCTGGCACCTCGTCAAAAACCACGACCACTCAGACCAAAGAGAGGGGGATCGAAGCAGCAAGATGGTTTCAGAGATCTACCTGACACGACTTTTAGCTACTAAGGGTACGTTGCAGAAGTTCGTAGATGACCTGTTTGAGACGATATTCAGCACGGCGCACCGCGGCAGCGCCCTCCCCCTCGCCATTAAATACATGTTTGACTTCCTGGATGAACAGGCAGACAAACACCAGATCACAGACGCAGATGTGCGGCACACGTGGAAGAGTAACTGtttgccTTTGAGGTTTTGGGTGAATGTGATCAAGAATCCTCAGTTTGTGTTTGACATCCACAAGAACAGCATTACGGacgcctgtctgtctgtggtgGCCCAGACTTTCATGGACTCATGTTCTACTTCAGAACATAAACTGGGCAAAGACTCGCCTTCTAATAAGCTGCTCTATGCTAAAGACATCCCCAACTATAAGAGCTGGGTAGAGAGataTTATGCGGATATCTCCCGCATGCCGACCATCAGTGATCAGGATATGAGTGCGTATCTGGCAGAGCAGTCTAGACTTCACGTTAACCAGTTCAACAGCATCAGCGCTCTCCATGAGATTTACTCTTACATCATCAAATACAAAGATGAGATCCTCTCTGCACTACAGAAAGATGAGCAGGCTCGGAGGCAGAGGCTGCGCAGCAAACTCGAGCAGGTCATCGACACCATGGCTCTGTCCAGCTGAGGACCGTCTTCCTCGCTGCCTTTAAATCATCCAACACAGACTTACAGACTAACAGACTGCACGATGGAGGCAGCCCACTGGAGACCCTCGCGGCCCAGGAGGAGAGGCATTCTTATCAGCTCCCCTGTACTCAGAGCGGGACGTCccaactttttatttatttattattattattattattattattattattatt

Function

NR:

description
PREDICTED: plexin-A1-like isoform X2

GO: NA

KEGG:

id description
K06820 PLXNA; plexin A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677283.1 True 6184 mRNA 0.53 32 17804083 18021997

Neighbor

gene id symbol gene type direction distance location
LOC103044854 LOC103044854,LOC108425484 coding upstream 71562 17630771 ~ 17732521 (+)
sars sars,LOC107671868,LOC107697960 coding upstream 176494 17601124 ~ 17627589 (+)
LOC103023305 NA coding upstream 214358 17564407 ~ 17589725 (+)
fam50a fam50a coding upstream 242067 17543782 ~ 17562016 (+)
LOC103046182 NA coding upstream 300019 17498763 ~ 17504064 (+)
wdr63 NA coding downstream 55653 18077650 ~ 18125936 (+)
LOC111194038 NA coding downstream 191888 18213885 ~ 18214673 (+)
cyr61 cyr61,cef10 coding downstream 340718 18362715 ~ 18365465 (+)
LOC103024383 LOC108441536,LOC108275807,LOC107550164,LOC107694430,LOC105904845 coding downstream 717061 18739058 ~ 18768420 (+)
LOC103025011 abce1,LOC108441533,LOC108275804,LOC107653221 coding downstream 811352 18833349 ~ 18853525 (+)
G132752 NA non-coding upstream 30087 17773735 ~ 17773996 (+)
G132750 NA non-coding upstream 32519 17771354 ~ 17771564 (+)
G132741 NA non-coding upstream 57243 17744961 ~ 17746840 (+)
G132718 NA non-coding upstream 69778 17729317 ~ 17734305 (+)
G132588 NA non-coding upstream 335869 17466270 ~ 17468214 (+)
G132806 NA non-coding downstream 9941 18031938 ~ 18032348 (+)
G132813 NA non-coding downstream 31412 18053409 ~ 18053975 (+)
G132814 NA non-coding downstream 32674 18054671 ~ 18055014 (+)
G132818 NA non-coding downstream 40631 18062628 ~ 18114558 (+)
G132837 NA non-coding downstream 115955 18137952 ~ 18139522 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 279730 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 294268 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 2066302 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 2337998 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 2406514 15364390 ~ 15397569 (+)
G133076 NA other downstream 1021497 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 1325471 19347468 ~ 19360891 (+)
G133246 NA other downstream 2101393 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 2271166 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 2744919 20766916 ~ 20783861 (+)

Expression


Co-expression Network