LOC103024383 (LOC108441536,LOC108275807,LOC107550164,LOC107694430,LOC105904845)


Basic Information

Item Value
gene id LOC103024383
gene name LOC108441536,LOC108275807,LOC107550164,LOC107694430,LOC105904845
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 18739058 ~ 18768420 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677292.1
ccTCACATCACAAAAACACCTGACTCCGTGTGTATTCTGAACAAACCTCTGCTCCAATCAGACGCAGCGCTTCAGCCACCTGTCTGCTGCACCTGCGGCCTCTTCACACGAGTGGCCCTCTGGAGCCGTGTGTGTCCCTTAAGCCTGGCATGTGTCTCTGTagtcgctcactctctctctttctctctctctctctctctctctctctctctctctctctgtttgtgatgGCCTCTGATCGCCCCGGTGCAGAGAGCTGTACGTCTCCACTCGGCTCCGGCTCACAGCGAGACTCTGAGATGTGGGAGGAAAACTTTGACACCGAGAAtcatgGTGTGGGCAGAAAGAGAGACTACTCTCCCGTATCTTGGAGCGAATACTTTGAGATGATGGACGACGTGGTGGTGGGATCAGCAGAAAGCAAGGATgtgttcCGTGTGTATAAGAGTGGGCAGGACGGGCctctgctggtgctgctgcatGGAGGGGGACACTCAGCGCTGTCCTGGGCcgtatttactGCAGCCATGACGAGTCGTGTCACCTGCCGAGTTTTAGCCATGGATCTACGAGGTCACGGTGTTACTCAAGTCCGCCATGCTGATGACCTCTCCACCCAGACCATGTCCAGAGATGTAGCAAATGTGGTGAGAGCCACATATGGCGAGGTCCCGCCCCCCATCGTCCTGGTTGGCCACAGTATGGGCGGAGCCATTGCTGTCCATGCTGCCAGTGGGAGCTTACTGCCATCAGTGGTGGGCCTGGTGGTTATCGATGTAGTAGAAGGAAGTGCCATGGACGTTCTTCACAGCATGCAGAACTTCCTGAAAGGTCGACCCAGATCCTTTAAGTCTATTGACCATGCGATTGAATGGAGtgttaaaAGTGGCCAAATCAGAAACCTGGAATCAGCCAAAGTGTCCATGGTCGGCCAAGTGCGGAGGTGTGAGGTAGAGGACGGAGACTGTGCGGAACAGGTGAGTCCAGTAACAGAGAGTGTAGCTGAAGGCCACGAGGAGTTCTACGACCTCAACTACGCCACTGACAAAGCTGAGAGCACTGCGTCAGAGCCATCAAGTGTGTACAGCTGGAAGATTGACCTGTCTAAAGCGGAAAAGTACTGGGACGGCTGGTTCAGAGGCATCTCCAACCTCTTCCTGAGCTGCAACGTCCcaaaactgctgctgctggcagGTATTGACCGTCTGGACAGAGATCTGACCATCGGACAAATGCAagGGAAATTCATGATGCAGGTGCTGCCCCCTTGTGGACATGCCGTGCATGAGGACACACCAGATAAGGTGGCTGACGCTCTTGCTGGTTTCATGACCAGACACAAGATTGCAGAGCCTCGCAGCGAAACCAAGAGCTCCTCGTACCCCTTCATGCGGTGAGTTCCAGAAGTTTGCAACAGCGCTGAGCTGACCGGCACCTTATAGAGGCAGGAGCTCCAGTTCAGCTCTCTAATGAAGAATCCTGACTTCTTTCTGTTCTactgttctttgttcttttttttctacatgtcaGTCTTACCTCTCTACTAGTTTCAGCAGCAGTTATCAGCTTTCTTACTATTTCTGACTTACCTTTTCTTGTGTGTGTCACCTAGAACTACAGGTGATTTGTGTATCAGTGCCAAGATACCTGATTTAATCTGAAAACGGCATTTCATTTCAAATCAGAATGAAAAGctttacccaaaaaaaatcacaataaaatttATTCATATTCAAAGCA
>XM_022677293.1
cccTCACATCACAAAAACACCTGACTCCGTGTGTATTCTGAACAAACCTCTGCTCCAATCAGACGCAGCGCTTCAGCCACCTGTCTGCTGCACCTGCGGCCTCTTCACACGAGTGGCCCTCTGGAGCCGTGTGTGTCCCTTAAGCCTGGCATGTGTCTCTGTagtcgctcactctctctctttctctctctctctctctctctctctctctctctctctctgtttgtgatgGCCTCTGATCGCCCCGGTGCAGAGAGCTGTACGTCTCCACTCGGCTCCGGCTCACAGCGAGACTCTGAGATGTGGGAGGAAAACTTTGACACCGAGAAtcatgGTGTGGGCAGAAAGAGAGACTACTCTCCCGTATCTTGGAGCGAATACTTTGAGATGATGGACGACGTGGTGGTGGGATCAGCAGAAAGCAAGGATgtgttcCGTGTGTATAAGAGTGGGCAGGACGGGCctctgctggtgctgctgcatGGAGGGGGACACTCAGCGCTGTCCTGGGCcgtatttactGCAGCCATGACGAGTCGTGTCACCTGCCGAGTTTTAGCCATGGATCTACGAGGTCACGGTGTTACTCAAGTCCGCCATGCTGATGACCTCTCCACCCAGACCATGTCCAGAGATGTAGCAAATGTGGTGAGAGCCACATATGGCGAGGTCCCGCCCCCCATCGTCCTGGTTGGCCACAGTATGGGCGGAGCCATTGCTGTCCATGCTGCCAGTGGGAGCTTACTGCCATCAGTGGTGGGCCTGGTGGTTATCGATGTAGTAGAAGGAAGTGCCATGGACGTTCTTCACAGCATGCAGAACTTCCTGAAAGGTCGACCCAGATCCTTTAAGTCTATTGACCATGCGATTGAATGGAGtgttaaaAGTGGCCAAATCAGAAACCTGGAATCAGCCAAAGTGTCCATGGTCGGCCAAGTGCGGAGGTGTGAGGTAGAGGACGGAGACTGTGCGGAACAGGTGAGTCCAGTAACAGAGAGTGTAGCTGAAGGCCACGAGGAGTTCTACGACCTCAACTACGCCACTGACAAAGCTGAGAGCACTGCGTCAGAGCCATCAAGTGTGTACAGCTGGAAGATTGACCTGTCTAAAGCGGAAAAGTACTGGGACGGCTGGTTCAGAGGCATCTCCAACCTCTTCCTGAGCTGCAACGTCCcaaaactgctgctgctggcagGTATTGACCGTCTGGACAGAGATCTGACCATCGGACAAATGCAagGGAAATTCATGATGCAGGTGCTGCCCCCTTGTGGACATGCCGTGCATGAGGACACACCAGATAAGGTGGCTGACGCTCTTGCTGGTTTCATGACCAGACACAAGATTGCAGAGCCTCGCAGCGAAACCAAGAGTTTGCAACAGCGCTGAGCTGACCGGCACCTTATAGAGGCAGGAGCTCCAGTTCAGCTCTCTAATGAAGAATCCTGACTTCTTTCTGTTCTactgttctttgttcttttttttctacatgtcaGTCTTACCTCTCTACTAGTTTCAGCAGCAGTTATCAGCTTTCTTACTATTTCTGACTTACCTTTTCTTGTGTGTGTCACCTAGAACTACAGGTGATTTGTGTATCAGTGCCAAGATACCTGATTTAATCTGAAAACGGCATTTCATTTCAAATCAGAATGAAAAGctttacccaaaaaaaatcacaataaaatttATTCATATTCAAAGCA
>XM_022677294.1
cccTCACATCACAAAAACACCTGACTCCGTGTGTATTCTGAACAAACCTCTGCTCCAATCAGACGCAGCGCTTCAGCCACCTGTCTGCTGCACCTGCGGCCTCTTCACACGAGTGGCCCTCTGGAGCCGTGTGTGTCCCTTAAGCCTGGCATGTGTCTCTGTagtcgctcactctctctctttctctctctctctctctctctctctctctctctctctctgtttgtgatgGCCTCTGATCGCCCCGGTGCAGAGAGCTGTACGTCTCCACTCGGCTCCGGCTCACAGCGAGACTCTGAGATGTGGGAGGAAAACTTTGACACCGAGAAtcatgGTGTGGGCAGAAAGAGAGACTACTCTCCCGTATCTTGGAGCGAATACTTTGAGATGATGGACGACGTGGTGGTGGGATCAGCAGAAAGCAAGGATgtgttcCGTGTGTATAAGAGTGGGCAGGACGGGCctctgctggtgctgctgcatGGAGGGGGACACTCAGCGCTGTCCTGGGCcgtatttactGCAGCCATGACGAGTCGTGTCACCTGCCGAGTTTTAGCCATGGATCTACGAGGTCACGGTGTTACTCAAGTCCGCCATGCTGATGACCTCTCCACCCAGACCATGTCCAGAGATGTAGCAAATGTGGTGAGAGCCACATATGGCGAGGTCCCGCCCCCCATCGTCCTGGTTGGCCACAGTATGGGCGGAGCCATTGCTGTCCATGCTGCCAGTGGGAGCTTACTGCCATCAGTGGTGGGCCTGGTGGTTATCGATGTAGTAGAAGGAAGTGCCATGGACGTTCTTCACAGCATGCAGAACTTCCTGAAAGGTCGACCCAGATCCTTTAAGTCTATTGACCATGCGATTGAATGGAGtgttaaaAGTGGCCAAATCAGAAACCTGGAATCAGCCAAAGTGTCCATGGTCGGCCAAGTGCGGAGGTGTGAGGTAGAGGACGGAGACTGTGCGGAACAGGTGAGTCCAGTAACAGAGAGTGTAGCTGAAGGCCACGAGGAGTTCTACGACCTCAACTACGCCACTGACAAAGCTGAGAGCACTGCGTCAGAGCCATCAAGTGTGTACAGCTGGAAGATTGACCTGTCTAAAGCGGAAAAGTACTGGGACGGCTGGTTCAGAGGCATCTCCAACCTCTTCCTGAGCTGCAACGTCCcaaaactgctgctgctggcagGTATTGACCGTCTGGACAGAGATCTGACCATCGGACAAATGCAagGGAAATTCATGATGCAGGTGCTGCCCCCTTGTGGACATGCCGTGCATGAGGACACACCAGATAAGGTGGCTGACGCTCTTGCTGGTTTCATGACCAGACACAAGATTGCAGAGCCTCGCAGCGAAACCAAGAGGTGACTCCTCGTACCCCTTCATGCGGTGAGTTCCAGAAGTTTGCAACAGCGCTGAGCTGACCGGCACCTTATAGAGGCAGGAGCTCCAGTTCAGCTCTCTAATGAAGAATCCTGACTTCTTTCTGTTCTactgttctttgttcttttttttctacatgtcaGTCTTACCTCTCTACTAGTTTCAGCAGCAGTTATCAGCTTTCTTACTATTTCTGACTTACCTTTTCTTGTGTGTGTCACCTAGAACTACAGGTGATTTGTGTATCAGTGCCAAGATACCTGATTTAATCTGAAAACGGCATTTCATTTCAAATCAGAATGAAAAGctttacccaaaaaaaatcacaataaaatttATTCATATTCAAAGCA

Function

NR:

description
PREDICTED: protein phosphatase methylesterase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677292.1 False 1740 mRNA 0.51 15 18739059 18768420
XM_022677293.1 False 1706 mRNA 0.51 14 18739058 18768420
XM_022677294.1 True 1745 mRNA 0.51 15 18739058 18768420

Neighbor

gene id symbol gene type direction distance location
cyr61 cyr61,cef10 coding upstream 373593 18362715 ~ 18365465 (+)
LOC111194038 NA coding upstream 524385 18213885 ~ 18214673 (+)
wdr63 NA coding upstream 613122 18077650 ~ 18125936 (+)
LOC103026658 LOC108425505,LOC107715025,LOC107671876,LOC106572368,LOC105022778 coding upstream 717061 17804083 ~ 18021997 (+)
LOC103044854 LOC103044854,LOC108425484 coding upstream 1006537 17630771 ~ 17732521 (+)
LOC103025011 abce1,LOC108441533,LOC108275804,LOC107653221 coding downstream 64929 18833349 ~ 18853525 (+)
LOC103025641 NA coding downstream 146965 18915385 ~ 18923002 (+)
LOC103025945 NA coding downstream 186269 18954689 ~ 18962846 (+)
LOC103045888 cntn3a.1,LOC108438208,LOC107696975,LOC107663068,LOC107705712,LOC107551535 coding downstream 267023 19035443 ~ 19195367 (+)
ttll9 ttll9 coding downstream 613892 19382312 ~ 19393378 (+)
G132983 NA non-coding upstream 23057 18711740 ~ 18716001 (+)
G132981 NA non-coding upstream 36874 18655259 ~ 18702184 (+)
G132948 NA non-coding upstream 96308 18642219 ~ 18642750 (+)
G132946 NA non-coding upstream 114756 18623572 ~ 18624302 (+)
G132926 NA non-coding upstream 223152 18436266 ~ 18515906 (+)
G132994 NA non-coding downstream 3971 18772391 ~ 18773605 (+)
G132996 NA non-coding downstream 7702 18776122 ~ 18776723 (+)
G133042 NA non-coding downstream 108259 18876679 ~ 18952450 (+)
G133046 NA non-coding downstream 122399 18890819 ~ 18908346 (+)
G133047 LOC103482394 non-coding downstream 123502 18891922 ~ 18907238 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 1214705 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 1229243 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 3001277 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 3272973 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 3341489 15364390 ~ 15397569 (+)
G133076 NA other downstream 275074 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 579048 19347468 ~ 19360891 (+)
G133246 NA other downstream 1354970 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 1524743 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 1998496 20766916 ~ 20783861 (+)

Expression


Co-expression Network