LOC103025011 (abce1,LOC108441533,LOC108275804,LOC107653221)


Basic Information

Item Value
gene id LOC103025011
gene name abce1,LOC108441533,LOC108275804,LOC107653221
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 18833349 ~ 18853525 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677298.1
AGCTCCGGTCGCGTGCTGTAGAGTAGCGGGCTGTGGCGCCATCTTCCCATCGGCTCCACCGTCCAAGCGCGCGGGTCTCCGCCCGCCTTCAACCGCTTTTCACAGCCTCTCTACACGCAGAACAACCGCGCTGACCGGAGCCGAGCGGCCTGCGGAGCGTCCTCCTCTTTCCTGTGTACAGCAGTCTCATCGTCTGCCTGTTCACCAGCACAATGGCTGACAAAAACACGAGGATCGCTATCGTCAACCACGACAAGTGCAAGCCTAAGAAATGCAGACAGGAGTGCAAGAAAAGCTGCCCTGTGGTGCGGATGGGTAAGCTGTGTATTGAAGTCACGCCTCAGAGTAAGATTGTGTGGATCTCGGAGTCTCTCTGTATcggctgtggtatctgcatcaAGAAATGTCCGTTTGGTGCTCTGTCGATTGTAAACCTACCAAGCAATCTGGAGAAGGAGACCACGCACAGATACTGCGCCAACTCCTTCAAACTGCACAgGTTGCCCATTCCACGTCCTGGAGAAGTGTTGGGGTTGGTGGGCACTAACGGAATTGGGAAATCCACCGCTCTGAAAATCCTGGCTGGGAAACAGAAACCAAACCTGGGCAAATTCGATGCTCCTCCAGACTGGCAGGAGATTCTGGCCTATTTTAGAGGATCCGAGCTGCAGAACTATTTCACCAAGATCCTGGAGGACGACCTGAAGGCCATCGTGAAGCCACAATACGTCGACCAGATCCCCAAAACCGTGAAGGGGTCAGTAGGGGCCATCCTGGGCAGAAAGGACGACACTAAGACGGAGGAGCTGGTGTGTGAGCAGCTTGatttGCTGCACCTGCGAGATCGTAACGTGGAGGACCTATCAGGAGGAGAGCTGCAGAGATTCGCCTGTGCAGTCGTGTGCATCCAGAGAGCAGACATTTTCATGTTTGACGAGCCGTCCAGTTACCTCGATGTGAAGCAGAGACTGAGGGCTGCCATCACCATCCGATCCCTCATCTCACCCGACAGGTATATCATCGTGGTTGAGCACGATCTGAGTGTCCTGGATTATCTGTCTGACTTTATCTGCTGTCTCTACGGCGTGCCCAGCGCTTACGGAGTCGTTACCATGCCCTTCAGCGTCCGAGAAGGCATCAACATCTTCCTGGACGGTTATGTCCCGACTGAGAACCTGCGTTTCCGTGAGACGTCTCTGGTGTTTAAAGTGGCGGAGACAGCAGCTGAAGAAGAGGTTAAGAAGATGTGCCGTTATCAGTATCCCAACATGACCAAACGCATGGGAGACTTCACCCTCAGCATCACAGAGGGAGAGTTCACTGACTCTGAGATCATGGTGATGCTCGGAGAGAACGGAACTGGGAAGACCACCTTCATTAGAATGCTGGCAGGTGGATTGAAACCTGATGGAGGAGGTGAAGTGCCAATTCTGAACGTGAGCTACAAACCTCAGAAGATCAGCCCCAAGTTCAAAGGCAGTGTTCGTGCTTTGCTTCATGAGAAGATCAGAGATGCTTATACACATCCCCAGTTTGTCACCGATGTCATGAAGCCCATGCAGATCGAGAGCATCATTGACCAGGACGTTCAGAACTTGTCTGGAGGTGAGTTGCAGCGTGTTGCGTTGGCTCTGTGTTTGGGGAAGCCGGCTGATGTTTACCTGATTGACGAGCCGTCGGCCTACCTGGACTCCGAACAGCGTCTCATGGCAGCCAGAGTCATCAAAAGATTCATTCTTCATGCAAAGAAAACTGCATTCGTGGTGGAGCACGACTTCATCATGGCCACCTACTTGGCAGACCGAGTGATTGTGTTTGACGGAATTCCCTCCAAAACCACCTCCGCCAACACACCACAGACTCTGTTAGCTGGCATGAACAAATTCTTGGCACAGCTGGAGATCACCTTCAGGAGAGACCCCAACAACTTCAGACCAAGAATCAACAAGCTCAACTCCATTAAgGACGTGGAACAAAAGAAAAGCGGCAACTACTTCTTCCTGGATGACTGAAGGGTCCATTCCAGAAATAATCAAATTCCCTCAGTGGTCCCTCTCCACTGggccacctctctctctctcccagtgcATGACCTTGGCTCACAAGATGAAGCACTGGGAGCGTTTACTTTATAAACACTGACTGACGCATCAACTCCACCGTTCAGAACAGCGGGTCCAGTTCCAGTAGCTCTGAATATCCTCCTCTGCCTCACCCCcttcacctcagcagtgctcagAGAGACCGAGGTGGTTTAGCTGATGATGGTGCTGGGTGCTGAAGAGGGTGGGGGAGAGGATGCTGTTTACAAATTTATCGAAGGGACCTAGAAAGACTGGTTTCTGGGTGaccaattataaaataaaatagtaattcaTGTGTTTTTACTGGTCACAAAGTGCTGCAATGGAGAGGGTGAGAAACTAGCCAAACATCAACTCTgtatattctaaataaaaatattttaatcattatatCACATCATACAGCTTATTAAACAGCCAGTTTCTCCAGA

Function

symbol description
abce1 Predicted to enable ATP binding activity; iron ion binding activity; and ribosomal small subunit binding activity. Predicted to be involved in ribosomal subunit export from nucleus; translational initiation; and translational termination. Is expressed in several structures, including alar plate midbrain region; head; intermediate cell mass of mesoderm; optic tectum; and ventral mesoderm. Human ortholog(s) of this gene implicated in human immunodeficiency virus infectious disease. Orthologous to human ABCE1 (ATP binding cassette subfamily E member 1).

NR:

description
PREDICTED: ATP-binding cassette sub-family E member 1-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K06174 ABCE1, Rli1; ATP-binding cassette, sub-family E, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677298.1 True 2515 mRNA 0.51 18 18833349 18853525

Neighbor

gene id symbol gene type direction distance location
LOC103024383 LOC108441536,LOC108275807,LOC107550164,LOC107694430,LOC105904845 coding upstream 64929 18739058 ~ 18768420 (+)
cyr61 cyr61,cef10 coding upstream 467884 18362715 ~ 18365465 (+)
LOC111194038 NA coding upstream 618676 18213885 ~ 18214673 (+)
wdr63 NA coding upstream 707413 18077650 ~ 18125936 (+)
LOC103026658 LOC108425505,LOC107715025,LOC107671876,LOC106572368,LOC105022778 coding upstream 811352 17804083 ~ 18021997 (+)
LOC103025641 NA coding downstream 61860 18915385 ~ 18923002 (+)
LOC103025945 NA coding downstream 101164 18954689 ~ 18962846 (+)
LOC103045888 cntn3a.1,LOC108438208,LOC107696975,LOC107663068,LOC107705712,LOC107551535 coding downstream 181918 19035443 ~ 19195367 (+)
ttll9 ttll9 coding downstream 528787 19382312 ~ 19393378 (+)
LOC103042623 LOC103042623,LOC108438215 coding downstream 544650 19398175 ~ 19400544 (+)
G132996 NA non-coding upstream 56626 18776122 ~ 18776723 (+)
G132994 NA non-coding upstream 59744 18772391 ~ 18773605 (+)
G132983 NA non-coding upstream 117348 18711740 ~ 18716001 (+)
G132981 NA non-coding upstream 131165 18655259 ~ 18702184 (+)
G132948 NA non-coding upstream 190599 18642219 ~ 18642750 (+)
G133042 NA non-coding downstream 23154 18876679 ~ 18952450 (+)
G133046 NA non-coding downstream 37294 18890819 ~ 18908346 (+)
G133047 LOC103482394 non-coding downstream 38397 18891922 ~ 18907238 (+)
G133055 NA non-coding downstream 72457 18925982 ~ 18931169 (+)
G133066 NA non-coding downstream 98500 18952025 ~ 18968519 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 1308996 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 1323534 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 3095568 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 3367264 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 3435780 15364390 ~ 15397569 (+)
G133076 NA other downstream 189969 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 493943 19347468 ~ 19360891 (+)
G133246 NA other downstream 1269865 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 1439638 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 1913391 20766916 ~ 20783861 (+)

Expression


Co-expression Network