LOC103025641


Basic Information

Item Value
gene id LOC103025641
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 18915385 ~ 18923002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677300.1
atggtgatgatagtATTGAAAGCTGTGctggtggggtgtgtgtgggtgagtgtgtggcCTGcacggtgtgtgtgtttttcgcGTGGGGCGGGTTCTTCTTCCTGCGTGGATATGAAGCCCGGCCACATCAGTGCTCAGCCGccttacacacactcttctgTTGCCGTACACACCAGCAGTAGCATCTACCTACCGCAACACACACTCATGGtgagtGTGCGCAGTTCCCGGGCGTTTATGGGCTTGCTGTTGCAGGCTCGCTCTGTGCCAGAGGACCGTGTGGTTGGAGGGCAGTTCACGCTGTATCCTCTGggaacacacactctctcctgcGTCTCCACTGCAGACACCGTCACACACTCCAACAAACGGCTGAAGAGGAACCTCTCTTTCAGCTGGAGAGCCCCAGCCCAGCCCAGCGGAGACCTCAGATTCTACATCACAGTGGTCCACTCCTATTTCGTGTACTGGGAACGGATCCCATCAGACTTGGTGTATGATGGCACCCGCAGAAATCGGAGTCCAGTTTATGATGCTAACCGGTTGACTAGGATGATCTCAGCATCTCTGATGAAAACAACAGACACATCTTCAGTTGCACCCGTATTTAACAGCACACAGTTCATAAACATCTACACAAATTCACCCCCCACTCATACCTCACCAGCTCATAAAGAAACATATTTAGATTCCTTTAAACATCTCACACATCCTCACACATCATCAGGCACACAcactacaactgcacacacCCCAGTGCACACTAAACCACACGGACATGTTTACACACAAACTCAAAAACCACCTGTGGGAACTCCAACACACAGATCACCTCCACTGACACCTCACACCAttccaaaaaaaagaatgaccacaccaaactctcacacacatgaGGATAGGTGGCTGGTAGCACACATTTTAGCAAAACATCAACACCAAAGTGGTGTATTTACACCAACCACCACACACCCTGACCAGCAAAGAGAAGCCATCACTGACCCTTCAACACCTGCACTTACCTCACATTTGCATCCACCATCACCTTCCTTCCCAAAGTCTTCCTCATCTTCAATCTCACAATTAATTCCAATACCAACTCCAGTTCAATCCCCAATCTTGACCTCAGTACCAGCCTCACCACCAGATCCAAAAGCCCTTCCACCATCAACCCTAATTCCATTCTCAAATCAAACAACAGACATAAATTTTACAGCCTCAATACCAACCCCAAATTCCATCCCAAACCCAGCCTCAATACCAAGATCAAATTCCATCCCAAACCCAACCTCAAATTCTATCCAAAACCCAGCCTCAATACCATTCTCAAATTCCATCCCAAACCCAGCCTCAATACCAAGATCAAATTCCATCCCAAACCCAACCTCAAATTCTATCCAAAACTCAGCCTCAATACCATTCTCAAAATCCATCCCAAACCCAGCCTCAATACCAACCTCAAATTCTATCCAAAACCCAGCCTCAATACCAACCTCAAATTCCATACCAAAGCCAGCCTCAATACCAACCCCAAATTCCATCCCAAACCCTGCCTCAATACCAACCCCAATTTCCATCCCAAACCCAGCCTCAATACCAACCCAAAATTCTATCCAAAACACAGCCTCAATACCAACCTTAAATTCCATACCAAACACAGCCTCAATACCAACCCCAAATTCTATCCAAAACTCAGCCTCAATACCAACCCCAAATTCCATCGCAAAGCCAGCCTCAATACCAATCTCAAACTCAATCACACTCCAATCTTTACACTCAACACGTACCCCAATCTCAATACCAACCCCAAATTCCATCCCACCCCCAGCCTCAATAGCAACCCCAAGTTCCATCCCAAAGCCAGCCTCAATACCTACCTCAAACTCAATCTCACTCCAACCTTTACACTCAACACTGACCCCAATTTCTATACCAACCCCAAATTCCATCTCAAACCCAGCCTCAATACCAACCTCAAATTCCATCCCAAACCCAACCTCAGTACCAACCCCAATTTCCATCCCAAACCCAGCCTCAATACCAACCTCAAACTCAATCTCTCTCCAACCTTTACACTCAACACTGACCCCAATCTCAAACTTAAACCTAACTTTAATACATTCAACCCCAACCAAAATATCAATCATATCCCAAAATTTGATCTTAAACTTAACTCCAGCCTCAACCTCAAATTTAACTCCAACATCCACTTTATCCCCAAATTCAATCTCAGTTCCAGCCTCAACACCAGTTCCAACCCTAATTCCAATCTTAAACCAAACAACAAAGCCAAATTTGACCTTAATCCCAATCCCAACACCAACCGCTACCCCAACTTTAACTTCCATTTCCCAATCCACAAACCCAAACACACGTTTAAGCTTAATTCCAACCCCCACCTCAGTTTTAATCCCAATCTCAAACCCAACCACAGCTCCAACCTTAATAACAAGTTTCTCACTGACCCCAGCATCAATCCCACCATCATCACTAATCTCTAGTCCATATTCAATTTTGAATTCAGCCAAAACACAACCTTTAAATCCAACCTACACCCAAACATCACCTCCAAACACAACCATAATCCCTGTTTCAATTCCCGTACCAATTTCAGCCCCAACCTCGACTTCAGTCCCAAATTATACCTCACCCTCAATCCCATCATCAACTTTACATCCGTCATCAACAACTcagacacaccttctcactTCTACACCATTACACAGCTCTACTGTTCCTTCATCCCCCCATCCTGACCCatctccagctctccagcgctcTCTTCTCAATCCCCTCCCAGACAGCGAGTCCCGGGAGGACCAGCCCCAGAAAGAGGAGGGTCCCTCTGAGTCCAGCCCCCCTCAGAGGCCCAGGGAGCAACCCAGAGCTCCAGATGAAAAAGGGGTGAAGCCAGATCTAGTACCCAGTCATAAAGCTTCAGAGCtggacctgctgctgctgctgggtctGTCTGCTGGTCTGGGGATGGCTGTGGCTGTGGGCCTGAGGTACCTGCAGAGAAAACACTGCCGCAAGCGCACAGCCATGTCACTGGGTGACCAGAGTCATGGCAACAGCGGCGTAATTCGTGTGCAGGAGTGTGGAGATCTGGTTCAGGTGCGCAGGATCCGAGAGAACAGCTTCTTGCTGCTGCAGGCCGAGTACAACCTCATCACCACACCGGGGAGCTAGAGCCGCtaatacaggggtgtccaaactttttttgttgggggccagaaggagaattatatttgaagtcacgggccacaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677300.1 True 3272 mRNA 0.48 4 18915385 18923002

Neighbor

gene id symbol gene type direction distance location
LOC103025011 abce1,LOC108441533,LOC108275804,LOC107653221 coding upstream 61860 18833349 ~ 18853525 (+)
LOC103024383 LOC108441536,LOC108275807,LOC107550164,LOC107694430,LOC105904845 coding upstream 146965 18739058 ~ 18768420 (+)
cyr61 cyr61,cef10 coding upstream 549920 18362715 ~ 18365465 (+)
LOC111194038 NA coding upstream 700712 18213885 ~ 18214673 (+)
wdr63 NA coding upstream 789449 18077650 ~ 18125936 (+)
LOC103025945 NA coding downstream 31687 18954689 ~ 18962846 (+)
LOC103045888 cntn3a.1,LOC108438208,LOC107696975,LOC107663068,LOC107705712,LOC107551535 coding downstream 112441 19035443 ~ 19195367 (+)
ttll9 ttll9 coding downstream 459310 19382312 ~ 19393378 (+)
LOC103042623 LOC103042623,LOC108438215 coding downstream 475173 19398175 ~ 19400544 (+)
sycp2 NA coding downstream 478853 19401855 ~ 19427830 (+)
G133046 NA non-coding upstream 7039 18890819 ~ 18908346 (+)
G133047 LOC103482394 non-coding upstream 8147 18891922 ~ 18907238 (+)
G132996 NA non-coding upstream 138662 18776122 ~ 18776723 (+)
G132994 NA non-coding upstream 141780 18772391 ~ 18773605 (+)
G132983 NA non-coding upstream 199384 18711740 ~ 18716001 (+)
G133055 NA non-coding downstream 2980 18925982 ~ 18931169 (+)
G133066 NA non-coding downstream 29023 18952025 ~ 18968519 (+)
G133043 NA non-coding downstream 53402 18976404 ~ 18987771 (+)
G133077 NA non-coding downstream 121247 19044249 ~ 19045514 (+)
G133079 NA non-coding downstream 122988 19045990 ~ 19047682 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 1391032 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 1405570 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 3177604 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 3449300 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 3517816 15364390 ~ 15397569 (+)
G133076 NA other downstream 120492 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 424466 19347468 ~ 19360891 (+)
G133246 NA other downstream 1200388 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 1370161 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 1843914 20766916 ~ 20783861 (+)

Expression


Co-expression Network