LOC111194121


Basic Information

Item Value
gene id LOC111194121
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23950901 ~ 23953570 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677374.1
ACAACAATAATGGACTGCTTTCAGCGTCGACAAAGCTGCTGGTTAGTTAATACGCAGGAACACTGCAAACGAGAAGATGCATTagtaaatatgtttattgaGACTGGGATGTCCACACGACTGTGTGACTTGATTGCCTTCAAAAAGTTTACCGTTTCGCTTGAACCAAAATTCAAGTCACCCGGTGCTGCAAGAGTGAATAACCTTATTGGTGCGAAAATGGAAAAGGCAAAGCACAAACTGAAGGAGATCATAAAGGACGCAAGGAAGCTGACCCTCTGTGTAGATGGTTGGAGCAAGAGAGGATTAACTGCATCTTTCATGGGTGTGTCAGCATGTTTTTATCATCCACCCGGAGGCCAGGTTCATCATGCTCTGCTTAACCTACACCGAATAGAGCACCCACACACCGGGGAGTGCATTGCTCGCTGCATTGGTGAGACATTAGAGGCATGGGGTATAGGAGATGACAAGGTGCTGCTCATTGTGACAGATAACGGCTCCAACATAGTCAAAGCTGTGCGGCTGCTTAGGGATAGAAGCCAAAAACAAAGTAAGGAGTCCCCAGATGGATCACGGGCTCAGCCAGGAGGTGCTGGAGATGGCCTGGATGAACTGTGGGTCGAATCAGAATCCGAGGAGACTGACGAGGAGGAGACTGACGAGGAGGAGATTGGAGAGACTGGAAACCTGGAACTTAACCTGCCAGATGATGGTGAGAACAGCAAGTTCCAGAGGATGCCATGCCTGGCCCACACCCTTCAGCTCACCCTGAAAGATGCCATCAAGCACCCAAATGCTGATGTGCTCATATCAAGAGCAAGAAAGCTGGTACATGCTGTGAGGAAATCGTCAGTAGCAAATGAAGCAATAATCAAAAAGTGTGGCAAAACTCTGGTCCGAGATTGTAGCACACGCTGGAACAGCACTTTGGATATGCTGATAAGACTGCTGGAGATCAGAACTGAACTAAACCAAGTACTTGAGGAGTTGGGCATGGACACACTTCTTACAAGCGATTGGGCTAAGATAGAAAACCTGGTCAAGCTCCTTGATCCCTTTGCCATTCACACAGACCAGCTTCAGGGGGACAGCCAGTCACTCTCACACGTGGTGCCATGCCTGCTCAACCTTGAGGCACACCTTCTGACAACTACTGCTGCTGGGAAGCAGTTAGCGCAAGTGCTGCTGAAGTCCTTACGAGAACGTTTTGCTGCCATTCTTAGCCCGGATTCCCCACACTTTGATGCTACCCCAGCAGCAGCCTGCCTATTGGATCCAAGTGTTTCGCTGATTCTTCAAACACCAGACATGGTGCCACTGAGGAGGGCAGCACAGTCTTTAGTAGAGACACTGGCAGCTCAGTACAACCCAGCTACTGCTCCTCAGGATGTCCCTGCCACTCAAAATGCAGTAGACTCCCCTCCTACTGTCCTCCAGAAATACCGCTTCCTTGCATCTCGTATGGAGGTCAATGTGTCATTGACAAATCAACCTGATGGGACTGACAGCCTCTTGACCGAAATGAAGAAGTAtgttgatgacataaaacaGAGTGTCTTTAATGAGACACCACTGCAGTTTTGGAGATCAAAGGAGGCTGTCTATCCAAAACTTGCACCTGTGGCACTGGATCTGGTTAGTGCCCCTGCCTCACAAGCCTTTGTGGAGCGCATATTCTCTGTGTGTGGTCTGTTGTCATCTGGCCTGAGAAACAGAACAACCACATCTTTGGAGCAGCGTGTTTTCCTCAAGATCAACAAGAAATTGTTGATTGACTGAAGTATACcaatttatctctctctgtctgttcacTTTTTGATGTTAAATACAACAAGCAAGGTTACTTCTACTGCACTGATATCCCCAAAAGTTGTACCTGCATCTAGTTATTGGCATTCCACTTTGTAATGTATTATTGAGTTTGTAATTTTGGTCAAAAAGCTAAgtttttgagtttatttttcTCAGATTGAGCTTCCTGATGCAAGTCTCATTaataagtttatatttttatgttcatATGTGTGCTTAGTCTGCTGGTTGTTTTCAGGAGCAGTATTACACATATTTTGCACTTAAGGCTGACATTTTGTGGACTGTTGTTCAACAGtaattgaatacattttttaaatggta

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677374.1 True 2139 mRNA 0.46 2 23950901 23953570

Neighbor

gene id symbol gene type direction distance location
LOC103021840 LOC108436304,LOC107741317,LOC106519302,LOC101477062,LOC107560879 coding upstream 92999 23834354 ~ 23857902 (+)
uba3 uba3,LOC108435248 coding upstream 118389 23813195 ~ 23832512 (+)
LOC103023698 LOC108435245,LOC108425699,LOC105906847,LOC108435246,LOC103365807,LOC105923626 coding upstream 227890 23717064 ~ 23723011 (+)
LOC103026317 LOC108435243,LOC108276480,LOC107672057,LOC107737654 coding upstream 244910 23671556 ~ 23705991 (+)
naca naca,LOC106571941,LOC100286403 coding upstream 296998 23641946 ~ 23653903 (+)
LOC103045952 idh3g,LOC108436344,LOC108275983,LOC108425561,LOC108276129 coding downstream 215835 24169405 ~ 24186748 (+)
LOC103045451 avpr2,LOC108436342 coding downstream 288930 24242500 ~ 24295274 (+)
LOC111194043 NA coding downstream 588676 24542246 ~ 24550608 (+)
fkbpl NA coding downstream 844955 24798525 ~ 24801627 (+)
trnan-guu_2 NA coding downstream 851232 24804802 ~ 24804873 (+)
G134085 LOC108435216,LOC108275538,LOC105013740,LOC104924681 non-coding upstream 133666 23815916 ~ 23817235 (+)
G134083 NA non-coding upstream 144360 23804250 ~ 23806541 (+)
G134070 NA non-coding upstream 191906 23738935 ~ 23758995 (+)
G134052 tfip11,LOC107741308,LOC107737658,LOC107671994 non-coding upstream 316310 23632470 ~ 23634591 (+)
G134050 NA non-coding upstream 344914 23605746 ~ 23605987 (+)
G134204 NA non-coding downstream 167837 24121407 ~ 24122160 (+)
G134197 fam120c,LOC108436345,LOC107741318,LOC107657034,LOC107562475 non-coding downstream 187500 24141070 ~ 24147795 (+)
G134225 NA non-coding downstream 274987 24228557 ~ 24229096 (+)
G134233 NA non-coding downstream 303301 24256871 ~ 24257103 (+)
G134234 NA non-coding downstream 364305 24317875 ~ 24322181 (+)
LOC103037602 LOC108435244 other upstream 280945 23655148 ~ 23669956 (+)
LOC111194020 NA other upstream 1543650 22405498 ~ 22407251 (+)
G133509 NA other upstream 2876850 21069316 ~ 21074051 (+)
G133503 NA other upstream 2932924 21011730 ~ 21017977 (+)
G133502 NA other upstream 2934985 21009907 ~ 21015916 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other downstream 369925 24323495 ~ 24336745 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 504306 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 536335 24489905 ~ 24503010 (+)
LOC103036968 LOC108436332 other downstream 652079 24605649 ~ 24661534 (+)
G134426 NA other downstream 668338 24621908 ~ 24632130 (+)

Expression


Co-expression Network