CI01000012_05112839_05116264


Basic Information

Item Value
gene id CI01000012_05112839_05116264
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5111405 ~ 5116264 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05112839_05116264.mRNA
GCTCTGTTACGCAGTTCTGGCGCTGGGCACGCAGACTGGTGTTCACTACAGGAGAGCGAGCGGGTGCTGTGGGATCTCTGCACAAGCTGTCACATGACCTTGGAGAAGGCAGGGCCATGCGAAGAGGGGGTGGTGCCTAAACAAGGTTTGAGAAGCAGGTGCTGTGCCGAGAGCCCCGACTGTGGTCCTTCCGCCTTTACTAAGTACTGTGCCAACACCAATGTGGATTCAGCCAACGTCACAGCGGGCGCAGGCATAGACAGTACTATACACCAGAGGAAATGCTGTCGCGTTGGCATCTCACGGACGCTACCTCGGCCCAGTGGCATCTTAAGAAATGGCCGTGAGCATATGTGTGCGCTGCCCCCTGGTGGCTGGACTACAGAGTACATGTGGAATGGCAGCGCAGGGCAGAGCCCCACGGGTCCCATCTGCATACCCTTCCCTCGTCATCCTAGAGAGGTCGGCCGGTTTCTGAACCCTGGGCCACCTGTTGGTGTAGGGGGAAACCTCACCACTGCTGCCAAGAGTCAGAGCTCCTCTGCTGGTCTGGCTGTACGTGTTTGTGGGTCTCCGGGGCTCGATGGACGCGTTTACACATCCGACCTGTGCCCTCCACCCCCTCGTCTCGACGACGGGGACACAGACTGTGACGTGGCTGATGCATCCATGTTTGACTTCTCCTCTGTGACGACCTGTAGCCCAGATGAAACTTTAAATCGGCTCAGAGGAGTGGAGGCTCGTGATGATGAGGACGATGATGAAGAGGACAGCGAGGTTCCAGTTCTCCTCAAACCTTCATACACTCACAACACTTCAGCCGTTCAGGCGGGGGGAAGCTTATGCATGCCGTGGCAGATTCCGAGACGGGCTCCTATTCCTGCCGAGGTTCGCATTGGGATGCAAGGAAAAACACGTGCCCCAAAACCACACAGAATCCCCGCCAGTGCCTTTCGGCCGATTTGGGACCCAATTTACTCACAGGGTGATGTGACACCTGCAAAAGAGAACTCTGTGTCCTTCAGCTCAACCAATCAGATCATTAATCAGCAGCAAGAGACTGACCAATCACGGTAAGAGGCGTATGGCTGTGTTTGGAATAACATGCTACCTTGATGACCTGCCAAAATGTGTAGTATAAGACAGAACAAGACAATAACCTCAGTTATAAAAACAGTTATGCGTTTAAGTAAATTTTTATCGATGCATTTATGTAATTTTTATAAATCAATGCATCGCGAATCGAGAAATGCTTCTGAGTTTTCCCGAATGCATCGCGATTTTCTCTTGAATCGATTCTGAGTTTAGTTTTTAACAGCAGATGGCGCTCTAAGCTAGTTTTTAACTCCACGCTCAAATGCTGATGAAGAAGAGTGCTGAAGAGTGCTCGTGTTCGGCTGAGTCTGAGAATGTATTTGCACCTCAGAATGCTTTTATGAGGTAAGATTAATGTAAACAGCTCACTGCAAACACCTTTGTAATTGGCTTCAACCTTTTCAAAATTTTCTGAATGATTATTTTATAGAAGGTTCAAGTGGTGTGTGTAAGGAATTGGAAGGAAGCAGAGTACATGCAGTGCCATCTGCTGTTCGAAAGAGAATCGCGATGCATTCCAAAAAAATCGATCCAGAATCATTTCTCGATTCATAATGCATCAATTTACTGTCCCAGCCCTAGTAAAAATGTCTTTCAAACAGTCAGATTATCATTCATTCCTATTATTCAATTTGAACTAAAGACCATTTAATTTTGAATGCAAGTCCCATCCATGTATGTAAAATACATAGTCAACATGAAATCAAAATTTTATATTATTTTTTATGGAATATTCCAATGTTTATTACGTAAGGGATAATGTACAAGGTGAAGTGTCTGGGTTTATTTTGGCTGGATGTACATTATCCCTTACTTATCCATGAACACCATTTTATTATTATTATTATTATTTTTAAAATATGCCCTTTAATCTTTAATCAAATCAAATAATTTTTAATCAAAAACATTAACATCCCTTCCCCTCCTCCCCGCAATGACATCACATCTCTGCTGACGTGTGCCCCAGCACAGGGCGGGCCAGTAATCCGTCCCTTCCAGCAACCTGTCACTCACATGATATTGCAGCAATTAGCAAACCACAATGATCCAATCAATTCTCAAAAGACAAAATCAAGTCCCGCCCTCGTGTCTCATTTGAGAATCTGTTTCACATGTATACACATCAAAATAAGAGTGGCTGCTCACTGCAGAGCCATGGGTGGAGCGTGAAGTCCAGCTTCCCCTCTCTAGATGTAATTTGGGCATGTAATTTGGGTGGAGCTAGAAGGTCCAACCACACCCTAACCCTACCCATAACACTCTCCCTCCACCCATTAGATCCACAGAGGTGGAGCTGGACTATGTCAAGCTCGACCCATGACATCCAGAGATGTCATTTGGCTCTGCAGCGAGCACCACTTGCAAAATAAGGAAGAAAAGATGACCACAACTTCCGTTGTGAAATCCTTCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05112839_05116264.mRNA True 2511 mRNA 0.46 4 5111405 5116264

Neighbor

gene id symbol gene type direction distance location
CI01000012_05091184_05092014 NA coding downstream 19391 5091021 ~ 5092014 (-)
CI01000012_05079456_05083333 ATP5S coding downstream 28072 5079247 ~ 5083333 (-)
CI01000012_05022143_05030697 ATL1 coding downstream 80708 5021743 ~ 5030697 (-)
CI01000012_04926292_04930302 TMX1 coding downstream 180931 4925496 ~ 4930474 (-)
CI01000012_04879477_04890031 FRMD6 coding downstream 221374 4879440 ~ 4890031 (-)
CI01000012_05118797_05123143 NA coding upstream 2068 5118332 ~ 5123143 (-)
CI01000012_05131253_05139664 CNIH1, MGC85215, CNIH1.S coding upstream 14766 5131030 ~ 5139675 (-)
CI01000012_05414096_05416676 TTC9 coding upstream 297105 5413369 ~ 5416780 (-)
CI01000012_05568600_05606181 NA coding upstream 452336 5568600 ~ 5606181 (-)
CI01000012_05609848_05631772 NA coding upstream 492569 5608833 ~ 5631932 (-)
G72174 NA non-coding downstream 42535 5067762 ~ 5068870 (-)
G72087 NA non-coding downstream 102708 5006622 ~ 5008697 (-)
G72078 NA non-coding downstream 134479 4966750 ~ 4976926 (-)
G72099 NA non-coding downstream 145055 4958706 ~ 4966350 (-)
G72141 NA non-coding downstream 194736 4916436 ~ 4916669 (-)
G72114 NA non-coding upstream 51258 5167522 ~ 5168375 (-)
G72111 NA non-coding upstream 57857 5174121 ~ 5174733 (-)
G72073 NA non-coding upstream 61318 5177582 ~ 5181057 (-)
G72208 NA non-coding upstream 117100 5233364 ~ 5234207 (-)
G72229 NA non-coding upstream 196964 5313228 ~ 5313478 (-)
G72068 NA other downstream 331273 4776220 ~ 4780132 (-)
G71898 NA other downstream 576733 4533530 ~ 4534672 (-)
G70774 NA other downstream 2244513 2866508 ~ 2866892 (-)
G69562 NA other downstream 3735107 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 3960207 1135676 ~ 1192154 (-)
G72204 NA other upstream 177509 5293773 ~ 5302206 (-)
G72294 NA other upstream 346576 5462840 ~ 5465857 (-)
G72629 NA other upstream 1030747 6147011 ~ 6147494 (-)
CI01000012_07356934_07358497 NA other upstream 2238988 7356863 ~ 7358612 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006153 si:ch211-67f24.7 coding NC_007124.7 CM002897.2 36633355 ~ 36638969 (+)