CI01000012_05118797_05123143


Basic Information

Item Value
gene id CI01000012_05118797_05123143
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5118332 ~ 5123143 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05118797_05123143.mRNA
GGTGGAGCTCTTTGGCAGGTATATTTTCCCCACCTGGGATTCGCTGACTGGGCGACCAGCTCTAGGTAAAAACACAAGCGCGCGCATGGAGGTTCAAGGCATGGTGTGTGAGTTGCGGGCAGGGTTTTCTCGTGCGCTGCTGGAGCTGAATCAGATTCAGCAGGGAGATACTGAGCTACAGAGCCAGCTGGAGGACACAAGACATGGCTGCAACAAGCGTGCACTTCATCTAGAGAGTCTGGTGCTGTCCCTCAAGGAGGAGCTGGAGGAGGTACGTTGTCAGTTTCGTCAGCTCTGTGAGACTCAAGACAGAAAACAACCAGAGAATCCAGGAAGAGAGAATAATGGAGTGGATGACAGCAACGGACAGAGTGATGGTGCTGCAGAGGCTCCTCCCCTTTCATCTGTGGGCGGAGCATTCCTCATACACTGTTACCTTCAAGGCTTACAGGTGTGGCAATGGGCCAGACAGAATACAGGCAGGAGGCGGGGTGTGGTGGAGATACTGTTGCAGTCTGAACGCGATTATGTGTCTAGTTTGAATCAGCTCTTTGAGAAATATAAATCTGCAGAGCAAAATGTGTCGTTTGTAAAGCATATTGATCAGATGCTACAGCGCCACCTGCTGTTCCGCAACACCCTAGAAGAACGTCTGACCACGGATGAGAGAAGCTGTGCAGCTGGAGATGCTTTTCTCAACCTCACTGGACAGAACAACGTAATGCCATATTACTACTAAAATAATAATCTGTTGTCCTTCATTAAATGTATCAAAAGTGACAGTAAAGATTTTTACATTGTTACAAAATATCTATTTCATATTAACGCTGTTCTTTTAAACTTTATATTCATCAAAGAATCCTGAAAAAAAAAAAATGTTTTCAAAAAAATATTAAGCAGCACAACTGTTTTCATCATTGATAATAATAAGAAATGTTTCTTTAGCAACAAATCAACATATCAGAATGATTTCTGGAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAAAAACATTTTAAAATATATTACAGTTATTTTAAATTGTAATAATATTTCACAACATTACTGTTTTTACTATACGTTTTGATCAAATAAATGCAGCGATGGTGCACTTAGAGACTTTTAAAAAAAACATAAAAAATTACAGACCCCAAACTTTTAAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05118797_05123143.mRNA True 1204 mRNA 0.41 6 5118332 5123143

Neighbor

gene id symbol gene type direction distance location
CI01000012_05112839_05116264 NA coding downstream 2068 5111405 ~ 5116264 (-)
CI01000012_05091184_05092014 NA coding downstream 26318 5091021 ~ 5092014 (-)
CI01000012_05079456_05083333 ATP5S coding downstream 34999 5079247 ~ 5083333 (-)
CI01000012_05022143_05030697 ATL1 coding downstream 87635 5021743 ~ 5030697 (-)
CI01000012_04926292_04930302 TMX1 coding downstream 187858 4925496 ~ 4930474 (-)
CI01000012_05131253_05139664 CNIH1, MGC85215, CNIH1.S coding upstream 7887 5131030 ~ 5139675 (-)
CI01000012_05414096_05416676 TTC9 coding upstream 290226 5413369 ~ 5416780 (-)
CI01000012_05568600_05606181 NA coding upstream 445457 5568600 ~ 5606181 (-)
CI01000012_05609848_05631772 NA coding upstream 485690 5608833 ~ 5631932 (-)
CI01000012_05672517_05674075 NA coding upstream 549086 5672229 ~ 5675834 (-)
G72174 NA non-coding downstream 49462 5067762 ~ 5068870 (-)
G72087 NA non-coding downstream 109635 5006622 ~ 5008697 (-)
G72078 NA non-coding downstream 141406 4966750 ~ 4976926 (-)
G72099 NA non-coding downstream 151982 4958706 ~ 4966350 (-)
G72141 NA non-coding downstream 201663 4916436 ~ 4916669 (-)
G72114 NA non-coding upstream 44379 5167522 ~ 5168375 (-)
G72111 NA non-coding upstream 50978 5174121 ~ 5174733 (-)
G72073 NA non-coding upstream 54439 5177582 ~ 5181057 (-)
G72208 NA non-coding upstream 110221 5233364 ~ 5234207 (-)
G72229 NA non-coding upstream 190085 5313228 ~ 5313478 (-)
G72068 NA other downstream 338200 4776220 ~ 4780132 (-)
G71898 NA other downstream 583660 4533530 ~ 4534672 (-)
G70774 NA other downstream 2251440 2866508 ~ 2866892 (-)
G69562 NA other downstream 3742034 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 3967134 1135676 ~ 1192154 (-)
G72204 NA other upstream 170630 5293773 ~ 5302206 (-)
G72294 NA other upstream 339697 5462840 ~ 5465857 (-)
G72629 NA other upstream 1023868 6147011 ~ 6147494 (-)
CI01000012_07356934_07358497 NA other upstream 2232109 7356863 ~ 7358612 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006152 si:ch211-67f24.7 coding NC_007124.7 CM002897.2 36613359 ~ 36626092 (+)