LOC111194019


Basic Information

Item Value
gene id LOC111194019
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 21095197 ~ 21096873 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650841.1
ctactAAGGCGCGCGGATCGTCAGAAAAAAGCGAAAATAACAGAGTTAACGCGGATAATGctgatatattttaaagtacagCATACGATGGTTTGTTTAATTCACTGCTTTAAAAACGGTAAAGGAAACAGACGACTAATTAATTGGTTTTGTAAGTCAGGACTGCTGTACAGAGATCCGCCctgctcctgctcctgctcctgctcctgctgctgtggGAGGAAGATGAAGCTTCAGCACACTGCAGATCAGACGGGCTTAAACGgtgttggacaagtGGGAGGTGTATTGTCTCCAATGATAAGATAGCTTCTTCAAGCAGGGATGCTGAACTTTTATTCATGCCTCATGAATTcatgagcttttttttgtttgtttttgctgtagGGAAATAGAGGTTCattggaaatgttttattttatcatgataattttattgttaaaacatTGGATAAACATTTCTATTGTGTTCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650841.1 True 475 lncRNA 0.39 2 21095197 21096873

Neighbor

gene id symbol gene type direction distance location
sla2 sla2 coding upstream 668118 20409205 ~ 20427079 (+)
LOC103029094 LOC108429302,LOC107696986,LOC107705726,LOC107594424,LOC107724192 coding upstream 813828 20253247 ~ 20281369 (+)
LOC103028561 LOC108429303 coding upstream 849506 20135533 ~ 20245691 (+)
LOC103040552 sulf2,sulf2b,LOC108429304,LOC107693554,LOC107724188,LOC107705722 coding upstream 962321 19908724 ~ 20132876 (+)
sycp2 NA coding upstream 1667367 19401855 ~ 19427830 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560 coding downstream 75084 21171957 ~ 21247961 (+)
myt1 LOC108440949 coding downstream 682691 21779564 ~ 21859171 (+)
LOC103034797 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC107707759,LOC107558232,LOC100536777 coding downstream 773584 21870457 ~ 21880919 (+)
plagl2 plagl2,LOC107558237,LOC107681868,LOC107707758,LOC107747490,LOC107559482 coding downstream 827462 21924335 ~ 21992497 (+)
LOC103042077 NA coding downstream 1286569 22383442 ~ 22390535 (+)
G133506 NA non-coding upstream 37281 21057707 ~ 21057916 (+)
G133497 NA non-coding upstream 124246 20970730 ~ 20970951 (+)
G133474 NA non-coding upstream 208650 20886166 ~ 20886547 (+)
G133443 NA non-coding upstream 302811 20792083 ~ 20792386 (+)
G133438 NA non-coding upstream 303279 20742958 ~ 20791918 (+)
G133520 NA non-coding downstream 36858 21133731 ~ 21134054 (+)
G133523 NA non-coding downstream 40802 21137675 ~ 21138588 (+)
G133527 NA non-coding downstream 59854 21156727 ~ 21156927 (+)
G133532 NA non-coding downstream 97857 21194730 ~ 21260384 (+)
G133557 NA non-coding downstream 196872 21293745 ~ 21299375 (+)
G133509 NA other upstream 21146 21069316 ~ 21074051 (+)
G133503 NA other upstream 77220 21011730 ~ 21017977 (+)
G133502 NA other upstream 79281 21009907 ~ 21015916 (+)
G133501 NA other upstream 80139 21008743 ~ 21015058 (+)
tcea2 tcea2 other upstream 311336 20766916 ~ 20783861 (+)
LOC111194020 NA other downstream 1308625 22405498 ~ 22407251 (+)
LOC103037602 LOC108435244 other downstream 2558275 23655148 ~ 23669956 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other downstream 3226622 24323495 ~ 24336745 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 3361003 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 3393032 24489905 ~ 24503010 (+)

Expression


Co-expression Network