LOC103029913


Basic Information

Item Value
gene id LOC103029913
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 15593395 ~ 15635911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650899.1
CACAGATGGACAGCGGTGAGGAGGTTCACTGGTCTCAGGCCTGGAAACCTGTAGCCTCTCCCCCAGAGTCCAAACCCTGGAAACATCAGTGGATTTTCATAAAGTGCCTTTTGCTAATTTGCTGTCTCATCCTCGGTTTCCCCTTCCCCCTGCTCCCTCGACTGAAGCCTTTTTTGCTCCGCCAGCCGAGCGTCCAGACATAAGCAGATTACTGTGGGAGATCCAGAGTGATGGAATGGCAGGGGTCCAAGAAGAACGCTGAAGGttagttacatttacatttatatttatatttacaggaTTTATCAGacacccttatccagagcgacttacaacagtgcttcagtGTTTACTTTAAATATCTATAGCTCTGTAGCACTGGGTCTTCTTGTCAAAGAAAGTCTCCATTCCTTTGAGGACCTCAGCTGTAATCCTACTAACTAGCTCGTCCGTGCTGCTGCCACACGCCAAGTCGCAATCCATTTATAAGTGTCGCCTGATGAACATTATACTGACTCAGCAGGACAGTACTAAAAATCAGTGTAGACAGGGTGAATGTAATTTTAAACTGGTGCTTTATTATACAGGTTAACACTGCAGTacatgaagcagcagcagctgacaGTTGAATAACTTAATACACctaaatactgtgttttgtgAATATACTGGAAGCTGTGGAGGACACGGGGCTGTCTGTTGGAGAGCAGCCAGTCTAAATAGCGTTCGGCAGCGAATACAGTGGATTTGGCTTCCATGTGGAATTTAGTTACCATGACAACACAAGAGAGAGAACATACTGCTGGGTAATCTTCAGACGACAAAAATGCTTCTGTCATATCTACCGTTCATCACATATTGAGCTGttgttaattattatatatttacatataactTGTGCTTCCAAAGCTTTGCTTTGAGTGTTCTTGAGTTTCTTGAATTTTGAAGGAAATTCTTCTATATTAAAAATCTTCTAAAGCTTTGAGTAACCTTCACATGATAAAACAAGTTTTCTAGTTAAACTGTACCCTATCCACTATACATTCttgagttttataaatatatatagcagaAAAACAAGTATTGCAATGTCCGTTTCATTTCCAGTATTCAACAaattatatagtataaatatgGTGAGACAAAGGTCAAAGGACagccttttatttcagaaaccaAGGGGAAATTAAACAAAAGGGAAAATGATGATATGAAATCTGAATACCCCAGCAATACCCCTATCTTTCAGCTGCCATATtccgttttttttaataaaagagtGTCCTGCAATTTTTGACTCACtatttatactatatactttgtaatattggaaaaaactgacactgcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650899.1 True 1349 lncRNA 0.39 3 15593395 15635911

Neighbor

gene id symbol gene type direction distance location
LOC103030870 NA coding upstream 9458 15581251 ~ 15583937 (+)
arhgef19 arhgef19,LOC103384789 coding upstream 17945 15535145 ~ 15575450 (+)
LOC103029593 ano7l1,ano11,LOC107591089,LOC107737547,LOC107716119 coding upstream 64267 15504781 ~ 15529128 (+)
plekhm2 plekhm2 coding upstream 102901 15467372 ~ 15490494 (+)
zbtb17 zbtb17,LOC107737543,LOC107591087 coding upstream 136842 15443380 ~ 15456553 (+)
rnf223 rnf223 coding downstream 3642 15639553 ~ 15727428 (+)
hes4 hes4 coding downstream 634338 16270249 ~ 16272189 (+)
perm1 NA coding downstream 760989 16396900 ~ 16409084 (+)
noc2l noc2l coding downstream 863561 16499472 ~ 16548502 (+)
LOC111194095 NA coding downstream 1218357 16854268 ~ 16867333 (+)
G132233 NA non-coding upstream 22654 15570173 ~ 15570741 (+)
G132231 NA non-coding upstream 55951 15536704 ~ 15537444 (+)
G132211 NA non-coding upstream 61926 15531131 ~ 15531469 (+)
G132205 NA non-coding upstream 110106 15482928 ~ 15483289 (+)
G132158 NA non-coding upstream 198979 15387928 ~ 15394416 (+)
G132248 NA non-coding downstream 1012 15636923 ~ 15637535 (+)
G132253 NA non-coding downstream 32297 15668208 ~ 15668737 (+)
G132314 NA non-coding downstream 175249 15811160 ~ 15839570 (+)
G132331 NA non-coding downstream 255042 15890953 ~ 15896037 (+)
G132355 agrn non-coding downstream 538415 16174326 ~ 16178359 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 127310 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 195826 15364390 ~ 15397569 (+)
G132146 LOC106581475 other upstream 352998 15240080 ~ 15240397 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other upstream 420498 15168008 ~ 15172897 (+)
G131677 NA other upstream 2652548 12913491 ~ 12940847 (+)
LOC103031494 NA other downstream 94986 15730897 ~ 15737781 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other downstream 1844027 17479938 ~ 17524353 (+)
snrpg snrpg other downstream 1870540 17506451 ~ 17509815 (+)
G133076 NA other downstream 3407583 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 3711557 19347468 ~ 19360891 (+)

Expression


Co-expression Network