G148339


Basic Information

Item Value
gene id G148339
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 473221 ~ 474195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU200782
CGTGTTGCATTGATTATCAGATCGATACGGAtggtaaaataatttaatcttaATTATGTAGCCATAGGTGTCTGTGTTTTAGCTTGAAGAAGAGCCGTGTAAACAGTATGTACATTCTTATGGCAGAAAAATAGAAGAATACAGCAGATGCTCTAGATCCAGAGTGTCTCTCTGAGATAAAACAGCTTCAGAAAAGGACGAAAAAGCTTTAATAAACGTATCAAAATAGACTTAATTCAATCGTCTGGAGTCCCGGCTCTGTCCGCTGCACATTTACACGCAGATAAGGACTAGGAGAGGATGGGAAGAAGCACTTATCAACACATGATAGCAGTTTACAGCACAGCAGACCATCCATCTCCTGAGAAGACAAGATACGAACTGAAAAAACATCgAAAAACACATGCACtgaatttttctttaaatataggTCCAGCATTGCTACATTAATATGATACATCATATGGTCAAAGGTCTGAGGACACctcttataataaataataatataaataataataataaataataatgctgaattaataataatgcatgtcattttccctccaaaatgtcatgtgactcgttagtgttactaggtctcaggtgtgcatagggagcaggtgtgttcaatttTGTGGTACAGCTCTCAGACTCTCtcaagcctcttctgaagtctgtacacaagaaagcctgcaaacagtttgctgtTTTGCTTCAGAGTTGTTGCTGTGGTAAATACGAACCGAAAAGCATCcgaaaagacaaagaaacagtatgatctaaaaacaaacgcacttaacttttatttaaatatatgtccAGCATtgctatattaatataatacacCATATGTCCAAAAGTCTGAGGACACCCCTCATAATagataataatcttaataataaaataaatgaagagatcacttcagtttctgaatcagtttctctgattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200782 True 949 lncRNA 0.36 2 473221 474195

Neighbor

gene id symbol gene type direction distance location
mrpl37 mrpl37 coding upstream 2104 458776 ~ 471117 (+)
tceanc2 tceanc2 coding upstream 26553 440863 ~ 446668 (+)
glmn glmn coding upstream 60631 390978 ~ 412590 (+)
LOC103029320 LOC108436061 coding upstream 115967 338177 ~ 357254 (+)
LOC103031862 NA coding upstream 139203 285164 ~ 334018 (+)
acot11 acot11 coding downstream 67305 541500 ~ 569439 (+)
tyw3 NA coding downstream 137044 611239 ~ 616353 (+)
lhx8 lhx8,lhx8a,LOC108436043,LOC107693563 coding downstream 206004 680199 ~ 696695 (+)
trnav-aac_10 NA coding downstream 508499 982694 ~ 982766 (+)
LOC103028630 NA coding downstream 516889 991084 ~ 1053935 (+)
G148330 NA non-coding upstream 15163 441948 ~ 458058 (+)
G148325 NA non-coding upstream 52106 420797 ~ 421115 (+)
G148323 NA non-coding upstream 67624 403080 ~ 405597 (+)
G148258 NA non-coding upstream 163026 309008 ~ 310195 (+)
G148253 NA non-coding upstream 178011 260245 ~ 295210 (+)
G148348 ssbp3 non-coding downstream 18089 492284 ~ 539224 (+)
G148381 NA non-coding downstream 267364 741559 ~ 743791 (+)
G148399 impad1 non-coding downstream 478241 952436 ~ 955851 (+)
G148397 NA non-coding downstream 491874 966069 ~ 968126 (+)
G148407 NA non-coding downstream 502834 977029 ~ 981096 (+)
LOC103021490 LOC103021490 other downstream 720340 1194535 ~ 1197577 (+)
G148442 NA other downstream 726090 1200285 ~ 1205400 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 1529404 2003599 ~ 2193725 (+)
G148599 NA other downstream 1638478 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 1819437 2293632 ~ 2403354 (+)

Expression


Co-expression Network