Gene
RNA
| Item | Value |
|---|---|
| gene id | G148348 |
| gene name | ssbp3 |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035913.1 |
| NCBI id | CM008316.1 |
| chromosome length | 28317440 |
| location | 492284 ~ 539224 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| ssbp3 | Predicted to enable single-stranded DNA binding activity and transcription coactivator activity. Predicted to be involved in head development and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within hematopoietic progenitor cell differentiation and mesendoderm development. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. |
| description |
|---|
| PREDICTED: single-stranded DNA-binding protein 3 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU200792 | True | 654 | lncRNA | 0.57 | 6 | 492284 | 539224 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mrpl37 | mrpl37 | coding | upstream | 21167 | 458776 ~ 471117 (+) |
| tceanc2 | tceanc2 | coding | upstream | 45616 | 440863 ~ 446668 (+) |
| glmn | glmn | coding | upstream | 79694 | 390978 ~ 412590 (+) |
| LOC103029320 | LOC108436061 | coding | upstream | 135030 | 338177 ~ 357254 (+) |
| LOC103031862 | NA | coding | upstream | 158266 | 285164 ~ 334018 (+) |
| acot11 | acot11 | coding | downstream | 2276 | 541500 ~ 569439 (+) |
| tyw3 | NA | coding | downstream | 72015 | 611239 ~ 616353 (+) |
| lhx8 | lhx8,lhx8a,LOC108436043,LOC107693563 | coding | downstream | 140975 | 680199 ~ 696695 (+) |
| trnav-aac_10 | NA | coding | downstream | 443470 | 982694 ~ 982766 (+) |
| LOC103028630 | NA | coding | downstream | 451860 | 991084 ~ 1053935 (+) |
| G148339 | NA | non-coding | upstream | 18089 | 473221 ~ 474195 (+) |
| G148330 | NA | non-coding | upstream | 34226 | 441948 ~ 458058 (+) |
| G148325 | NA | non-coding | upstream | 71169 | 420797 ~ 421115 (+) |
| G148323 | NA | non-coding | upstream | 86687 | 403080 ~ 405597 (+) |
| G148258 | NA | non-coding | upstream | 182089 | 309008 ~ 310195 (+) |
| G148381 | NA | non-coding | downstream | 202335 | 741559 ~ 743791 (+) |
| G148399 | impad1 | non-coding | downstream | 413212 | 952436 ~ 955851 (+) |
| G148397 | NA | non-coding | downstream | 426845 | 966069 ~ 968126 (+) |
| G148407 | NA | non-coding | downstream | 437805 | 977029 ~ 981096 (+) |
| G148426 | NA | non-coding | downstream | 547582 | 1086806 ~ 1142532 (+) |
| LOC103021490 | LOC103021490 | other | downstream | 655311 | 1194535 ~ 1197577 (+) |
| G148442 | NA | other | downstream | 661061 | 1200285 ~ 1205400 (+) |
| LOC103032064 | LOC108440872,LOC107705307,LOC107653521,LOC107660320 | other | downstream | 1464375 | 2003599 ~ 2193725 (+) |
| G148599 | NA | other | downstream | 1573449 | 2112673 ~ 2114465 (+) |
| tnk2 | tnk2 | other | downstream | 1754408 | 2293632 ~ 2403354 (+) |
