G148381


Basic Information

Item Value
gene id G148381
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 741559 ~ 743791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU200840
agtagaggtgtgccaaaaaatcgattcacataagaatcttgattctcatttactacgattcagaatcgatttaaaatgtcccaaaatcgattctgaggggcgggttttagactgattttgggctgggtatttttgttggacctggcaaccctggggatagcgcttgtccctttggagatcttccagacacacacagagcgtaggtgtatgagaattaccggtaagatggcagaacaagcactatattaccttagattaacgtgtagtttcaatgttttatggcagaatgcttcataacaagcataaaaaagatcgctagtagttagtttcagtaactgttagctagctaactagctaactttccagttccaccttaaataacgctacaggtggcagcgggctgcagcatttaaggcggaacggaaaaataacaataagctaatcagagctaatttcagctcctcatcacagaggaattaaggaatggacaatatgaattaatttctccacctcctgccccctttctgaagaaatacaaccaccttaaattaactagttaatcagcagctgctcctgaactttagcgctccactgctatcatcacatcagcccagcagcgtcacctacacaccaccgctagtagcctggtaataaagcagtgttatttattatttatttattgttcattaacgtcattgtgatatcccagtgattcctctgtcactgaggacccacattcctgcacattttattgtttttgtaacacattacctgctccaggaccagtgtatattatggagggttttttttcaatacgattcataagccagaagcagaaatatttataattcaaatcgttttgaatcaaaaatcgattttgaatcgaatcgtggcccccaaaatcggaatcgaatcgaatcgtgagatagtaatcgattcccacccctagttg
>TU200841
agtagaggtgtgccaaaaaatcgattcacataagaatcttgattctcatttactacgattcagaatcgatttaaaatgtcccaaaatcgattctgaggggcgggttttagactgattttgggctgggtatttttgttggacctggcaaccctggggatagcgcttgtccctttggagatcttccagacacacacagagcgtaggtgtatgagaattaccggtaagatggcagaacaagcactatattaccttagattaacgtgtagtttcaatgttttatggcagaatgcttcataacaagcataaaaaagatcgctagtagttagtttcagtaactgttagctagctaactagctaactttccagttccaccttaaataacgctacaggtggcagcgggctgcagcatttaaggcggaacggaaaaataacaataagctaatcagagctaatttcagctcctcatcacagaggaattaaggaatggacaatatgaattaatttctccacctcctgccccctttctgaagaaatacaaccaccttaaattaactagttaatcagcagctgctcctgaactttagcgctccactgctatcatcacatcagcccagcagcgtcacctacacaccaccgctagtagcctggtaataaagcagtgttatttattatttatttattgttcattaacgtcattgtgatatcccagtgattcctctgtcactgaggacccacattcctgcacattttattgtttttgtaacacattacctgctccaggaccagtgtatattatggagggttttttttcaatacgattcataagccagaagcagaaatatttataattcaaatcgttttgaatcaaaaatcgattttgaatcgaatcgtggcccccaaaatcggaatcgaatcgaatcgtgagatagtaatcgattcccacccctagttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200840 True 952 lncRNA 0.40 2 741559 743791
TU200841 False 952 lncRNA 0.40 2 741559 743791

Neighbor

gene id symbol gene type direction distance location
lhx8 lhx8,lhx8a,LOC108436043,LOC107693563 coding upstream 44864 680199 ~ 696695 (+)
tyw3 NA coding upstream 125206 611239 ~ 616353 (+)
acot11 acot11 coding upstream 172120 541500 ~ 569439 (+)
mrpl37 mrpl37 coding upstream 270442 458776 ~ 471117 (+)
tceanc2 tceanc2 coding upstream 294891 440863 ~ 446668 (+)
trnav-aac_10 NA coding downstream 238903 982694 ~ 982766 (+)
LOC103028630 NA coding downstream 247293 991084 ~ 1053935 (+)
LOC103022131 LOC108280703 coding downstream 378224 1122015 ~ 1192644 (+)
LOC103027172 NA coding downstream 658232 1402023 ~ 1413005 (+)
LOC107197232 LOC108436029 coding downstream 703664 1447455 ~ 1460722 (+)
G148348 ssbp3 non-coding upstream 202335 492284 ~ 539224 (+)
G148339 NA non-coding upstream 267364 473221 ~ 474195 (+)
G148330 NA non-coding upstream 283501 441948 ~ 458058 (+)
G148325 NA non-coding upstream 320444 420797 ~ 421115 (+)
G148323 NA non-coding upstream 335962 403080 ~ 405597 (+)
G148399 impad1 non-coding downstream 208645 952436 ~ 955851 (+)
G148397 NA non-coding downstream 222278 966069 ~ 968126 (+)
G148407 NA non-coding downstream 233238 977029 ~ 981096 (+)
G148426 NA non-coding downstream 343015 1086806 ~ 1142532 (+)
G148435 NA non-coding downstream 406285 1150076 ~ 1207563 (+)
LOC103021490 LOC103021490 other downstream 450744 1194535 ~ 1197577 (+)
G148442 NA other downstream 456494 1200285 ~ 1205400 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 1259808 2003599 ~ 2193725 (+)
G148599 NA other downstream 1368882 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 1549841 2293632 ~ 2403354 (+)

Expression


Co-expression Network