G148507


Basic Information

Item Value
gene id G148507
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1589157 ~ 1589608 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201007
TATCATCGAAGAGTGTGtaccaaaataaaaatcttggttttgtagagatgcggatttcattttccagcaggacttggcacactgcccacactgccaaaagtaccaattggtcttatataatattcaaattttctgagatactgatttttgggttttcattggctgtaagccaaaattatcaacaataaaagaaaaaaacacttataatagatcactctgtgtttaatacatctatataatatatgagtttcacctTTGAGATGTGCCTGTAGGAGTTCCTGATACTACTGTGTCGTCTATATTGCGCAGCTCTatcaggtatatatatatatacatttctggaaaaaaataagagatcacttaaaaatgatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201007 True 372 lncRNA 0.33 2 1589157 1589608

Neighbor

gene id symbol gene type direction distance location
proc LOC108440860,LOC108440861 coding upstream 53674 1523601 ~ 1535483 (+)
LOC103026285 saga,LOC108440874,LOC108280708 coding upstream 107631 1464657 ~ 1481526 (+)
LOC107197232 LOC108436029 coding upstream 128435 1447455 ~ 1460722 (+)
LOC103027172 NA coding upstream 176152 1402023 ~ 1413005 (+)
LOC103022131 LOC108280703 coding upstream 396513 1122015 ~ 1192644 (+)
LOC103034819 LOC108440876 coding downstream 49701 1639309 ~ 1671242 (+)
LOC103035142 phb2a,phb2,LOC108440869,LOC107653518,LOC100703857,LOC107564245,LOC101465856,LOC107705310 coding downstream 277515 1867123 ~ 1886581 (+)
LOC111194472 NA coding downstream 307865 1897473 ~ 1902454 (+)
LOC103031003 NA coding downstream 366554 1956162 ~ 1960545 (+)
LOC103035460 NA coding downstream 638918 2228526 ~ 2261643 (+)
G148506 NA non-coding upstream 5132 1581352 ~ 1584025 (+)
G148489 NA non-coding upstream 35644 1474464 ~ 1553513 (+)
G148498 NA non-coding upstream 77388 1508432 ~ 1511769 (+)
G148493 NA non-coding upstream 87759 1488987 ~ 1501398 (+)
G148490 NA non-coding upstream 90824 1490482 ~ 1498333 (+)
G148521 NA non-coding downstream 43452 1633060 ~ 1634757 (+)
G148523 NA non-coding downstream 93850 1683458 ~ 1688461 (+)
G148531 NA non-coding downstream 107476 1697084 ~ 1712456 (+)
G148546 NA non-coding downstream 207800 1797408 ~ 1802305 (+)
LOC111194451 NA non-coding downstream 394005 1983613 ~ 1989391 (+)
G148442 NA other upstream 383757 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 391580 1194535 ~ 1197577 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 413991 2003599 ~ 2193725 (+)
G148599 NA other downstream 523065 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 704024 2293632 ~ 2403354 (+)
LOC103027938 NA other downstream 1404598 2994206 ~ 3010066 (+)
G149226 NA other downstream 2402202 3991810 ~ 4009735 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G230336 NA non-coding NC_053134.1 CM020931.1 25495148 ~ 25495399 (+)