G148521


Basic Information

Item Value
gene id G148521
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1633060 ~ 1634757 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201025
CGGGCTTTCTGTGCTCACTGTGTTGCTTTCTTCCTCAAACTCTAGATGTTCGTGGCTCTCTTGTGCTGGACAGGAACTCAGCAGGAGGCTCAGGACCAGGGGCAACAGTGGCCCTCCTGCCCCAAGCCAGGGCAACATGCTGCAGTGTTAGAGGGCAGTCCTTTAGGCAAATCCTCAGAGTGCTGGTCCCATCCCAGTCCAGGGAGTCAACTAATGGTTCTGTAGTCCTCAGATTGCAGAAGAGGAATTGCTTCAAGAAATAAccttaaaattataaaagatgCTGCTGTccaatgttaaaaatgaatCCTCAGTTCTCAATCAAAATTTAGAGAGCATTTTTAGTCAGGAAATTTAAGTGGTCCTCAACAGTTTGTTGGTTCTCTCAGTCTCGATTTGGAGATTGAGTCATAAATCCTTGGTCAACTTGCTTGCATGTTCTTTTTTGGAGGGAATCGAAATAGTTTGCATCAAAGTCATCCTCAAGACTTTATTGGTGTCTTTTCAGCCTTGCTTTGGGGATTAATTTGTCTTCTTATATAGTTTTGAAGATTGTATCTCAAATTCTTGATAAAAAAATCAGCTCAAGTTGTTCGTTGAAAGAGTGGAGGTCTCTTTTAAGAGTTTGTAGATCCTCTCAACCTTGGTTTGAAGATTATATCTTAAATCCTTAGTCAAATAACAGCTTGAACGTGACCCTTAAGTGTTTTCAGGTCCTCTGAACCTTGGGTTTGGAGATTGTATCTCAAAttcttgattaaaaaacagctcTTTTAAGAGTTTGTAGATCCTTTTATACTTGGTTTGGAGTCAGATAACAGCTTGAAAGTGGTCCTCAAACGTTTTTCGATCCTCTCAACCTTGGTTTGGAGACTGTTTCTCAAATCCTTGGTCCCTAAGAGTTATTTGAGTTGCAAGAGCACTTTGAGTTGCAAATCCTTGATCAAATACCAGCTCAAGTTGTTGCTTCGACAATTGAAATGGTCCTCAAGATAAAGATTAAAGAAGCATTGGTGTGAATCTAGTTCTTGGTTTCTTGGATGGAGATTCCCAGTTCTTTGGAGTCAGATCAGCatctctgttctctgttcttttttaaagtAGTCCTTAAGGTCTATTCCTCAGTTCTCTGTATACAGAAGCTCCCATGCCATCTTAGACCATCTACACCTTCTTACTACAGTCTTACTATGGTCTAAACATCCTCAGATCAAGTGTGTGCATTCCATAAAAACGGCATGTGTGGCACTGTGGTGATTAACAGTCGCGTGGCTTAGTTACAGTGTGACTGCTCGTGATAAAGCCAGCTCGTGGGTGGTATTTCCTCTTGTCTCAGGGTTTCCCTTGTGTCCTGTTGACTCAACCCAGAGCCTTTGCTTGCCCAGATGTTCCTGTAATTCCTTGagtgatgctgatgctgatgtttCGTTCCTCCAGACTCCAGTCTCCTTCCAAACCTCCTTCTTCTTCCTAATGTTCTTCACCCAGCTGTCTCAGCCTCCAGAGCAGACCAGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201025 True 1518 lncRNA 0.42 2 1633060 1634757

Neighbor

gene id symbol gene type direction distance location
LOC103025667 wdr33,LOC107695163 coding upstream 40560 1552795 ~ 1592500 (+)
proc LOC108440860,LOC108440861 coding upstream 97577 1523601 ~ 1535483 (+)
LOC103026285 saga,LOC108440874,LOC108280708 coding upstream 151534 1464657 ~ 1481526 (+)
LOC107197232 LOC108436029 coding upstream 172338 1447455 ~ 1460722 (+)
LOC103027172 NA coding upstream 220055 1402023 ~ 1413005 (+)
LOC103034819 LOC108440876 coding downstream 4552 1639309 ~ 1671242 (+)
LOC103035142 phb2a,phb2,LOC108440869,LOC107653518,LOC100703857,LOC107564245,LOC101465856,LOC107705310 coding downstream 232366 1867123 ~ 1886581 (+)
LOC111194472 NA coding downstream 262716 1897473 ~ 1902454 (+)
LOC103031003 NA coding downstream 321405 1956162 ~ 1960545 (+)
LOC103035460 NA coding downstream 593769 2228526 ~ 2261643 (+)
G148507 NA non-coding upstream 43452 1589157 ~ 1589608 (+)
G148506 NA non-coding upstream 49035 1581352 ~ 1584025 (+)
G148498 NA non-coding upstream 121291 1508432 ~ 1511769 (+)
G148493 NA non-coding upstream 131662 1488987 ~ 1501398 (+)
G148490 NA non-coding upstream 134727 1490482 ~ 1498333 (+)
G148523 NA non-coding downstream 48701 1683458 ~ 1688461 (+)
G148531 NA non-coding downstream 62327 1697084 ~ 1712456 (+)
G148546 NA non-coding downstream 162651 1797408 ~ 1802305 (+)
LOC111194451 NA non-coding downstream 348856 1983613 ~ 1989391 (+)
G148565 NA non-coding downstream 355807 1990564 ~ 1990776 (+)
G148442 NA other upstream 427660 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 435483 1194535 ~ 1197577 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 368842 2003599 ~ 2193725 (+)
G148599 NA other downstream 477916 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 658875 2293632 ~ 2403354 (+)
LOC103027938 NA other downstream 1359449 2994206 ~ 3010066 (+)
G149226 NA other downstream 2357053 3991810 ~ 4009735 (+)

Expression


Co-expression Network