G148589


Basic Information

Item Value
gene id G148589
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2076606 ~ 2087733 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201111
tagaggtgggcaatattatatcgtatacaatatatcgtgacacagaaatatcatgatattaaaaatccatatcgtgataatagggctgttctgtcttaaaagtagtctattatttactgtgaagctttaggtgtatttattgtataattgttttagtttgcagtttatatgcatgcactaaatattctgcaatattatttgctgcattatattattttatgctatattatttattttgccacattatgattattctgttatactattatactatattcctgaaattaattaattattttagttttcctatatcgccaagtatatcgttatcgcaaaaataccctgaaatatcgtgatattattttagagccatatcgcccacccctattgcccatgtttgttctgtttgctgctgtttctccctTTCGCTATCTCACTCACTCCGTCTCTCCCTCattccctctctcacactcgtgctgtctctctatctcttgctttcactcgcactgtctctcactcacactcacactcacactccgGCCAGCGATTCACGCCTGCCGCCTCTCATAATTCTCAGCTCTTTCTCTAAAGCCCCTCCTCACTCATGAACTCATCCCCCACTGCCTCATCCCTGCCTCCATCCATCACCCCCCAGCCATGAGCTCATCCTCCATCCACAGGCCTCGCCTCGCCTCACACCCTCTAATCACTACTGTTCACTATTTCACCATAGTGTTACACTGTGGTGTTCAGTCACAGTTGGGTCGGCACAGTTTTGGATGTCCAATATTTGTCAAATTCcaggaaaaatcagaaaagatTATCATTACAACATTAAAATCCAATTCTGCACCCAATACAGCATGTTTTAAACCAGTTAATCAGAAATCACTAGCTCCAAATTCATGATTATTGGATTAAAATGGTGATAAaaggtcaaaaaaaaaattacaaacctGCTGTTGGAGCTGCATAGGGGGACTGACTACACATTAATGACTGTGGAACTGTTTAGAATAGGATTTTGTAAAAGATCCTGTACGTTGCTGTTTGTAGGTGTCAGAATATTTGGCCCAATTAATCGGCTGATGGTTTAAGCAGTCATCTAAAAATGGGAATAATCGTCCCAATTAATCGGCTAATGGATTAATTGTTTATCTAAAAATTTGGGCACAATCACCCTGATTAATTGGCTAAACGATTAAGCAGTTATCTAAAAATGAGCAAAATTGTCCCAATTAATCGGCAACCAACTAAGCCATTATACTCAAGCGTTTCCCTCCAGAACCATTTAGCAATCTAAGGAAAAACATCGGACCATATGAATCATAAATAAGAGAAATCTATTTAATCTAGTTGTCATTTATTGGCCAACTAATTAATCGACTATCTATCAATTGAAATAATTGGCTTGATTAATTGGCCGACCAATCGATTATCGAAAAATGGAAATTAAGTGATTATACTCTAGTGTTTCCCTCCAGAACAGAGTAGCAGATTAGCAGTCTAAAGAACATACTGGACCAAATAAGTGATAAATAAGAAATCTATCTAGTTCACACTAATTGGCCTACCAATTAATCTCTTTCTAACATCGAAGTAATCTGCCTTACTAATTGGGCGCCCGATTAATTAtcgaaaaatagaaataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201111 True 1653 lncRNA 0.37 2 2076606 2087733

Neighbor

gene id symbol gene type direction distance location
LOC103031003 NA coding upstream 116061 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 174152 1897473 ~ 1902454 (+)
LOC103035142 phb2a,phb2,LOC108440869,LOC107653518,LOC100703857,LOC107564245,LOC101465856,LOC107705310 coding upstream 190025 1867123 ~ 1886581 (+)
LOC103034819 LOC108440876 coding upstream 405364 1639309 ~ 1671242 (+)
LOC103025667 wdr33,LOC107695163 coding upstream 484106 1552795 ~ 1592500 (+)
LOC103035460 NA coding downstream 140793 2228526 ~ 2261643 (+)
LOC103030361 LOC108430157 coding downstream 710129 2797862 ~ 2891311 (+)
LOC103027018 LOC108430159 coding downstream 849568 2937301 ~ 2967577 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 940650 3028383 ~ 3139358 (+)
gata6 gata6 coding downstream 1111052 3198785 ~ 3207918 (+)
G148586 NA non-coding upstream 8715 2067602 ~ 2067891 (+)
G148566 NA non-coding upstream 79015 1997291 ~ 1997591 (+)
G148565 NA non-coding upstream 85830 1990564 ~ 1990776 (+)
LOC111194451 NA non-coding upstream 87215 1983613 ~ 1989391 (+)
G148546 NA non-coding upstream 274301 1797408 ~ 1802305 (+)
G148592 NA non-coding downstream 2215 2089948 ~ 2091693 (+)
G148593 NA non-coding downstream 2620 2090353 ~ 2092844 (+)
G148594 NA non-coding downstream 4322 2092055 ~ 2093097 (+)
G148569 NA non-coding downstream 11187 2098920 ~ 2183951 (+)
G148602 NA non-coding downstream 30947 2118680 ~ 2120119 (+)
G148442 NA other upstream 871206 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 879029 1194535 ~ 1197577 (+)
G148599 NA other downstream 24940 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 205899 2293632 ~ 2403354 (+)
LOC103027938 NA other downstream 906473 2994206 ~ 3010066 (+)
G149226 NA other downstream 1904077 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 2039216 4126949 ~ 4131384 (+)

Expression


Co-expression Network