G148606


Basic Information

Item Value
gene id G148606
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2132945 ~ 2134094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201133
gtagcagagggaagctgtaagatatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcgagcagtttggactgtgtgtctctccactcttcctccagactctgatttctcccttgatttacaaatgaaatgtaaaatttactgatgatcagtgatggtttgaagtaCCACCTTCCGTTTTAAGAAGATTCAATTGGAATTTGCGCCCTAGAGACTCGAGACTGAACCTGGGTTTACACCCTAAAAGACTCTATACTTGCCTCAGACTCATACCATAAAGACTGGAAATATTACAAATACATGTACCCTGCCCGACtcaagactcaagactcaaatTGCACTCTAAACTCAATTTGCACTGATGCCCTAAATACTCAAGACTCATAACCTAGAGACTTAAGATTAAAGTCTCTAAACTCAACAATAATTCATATCCTACAGACTAGAGACTCTACTCAGACTCATACCCTAGATTTTTGAGATTTAACTCAGACCTGTATCCTAGAAAATGTAATCTGACTCATATTCTAGAGCTAATTGGCTTGCTTTTAGTACAGAGAGTGGAGCAGACAAAGTGCTGATAGGAAAGCCCCCTTTGCTTTGGAGATCTGCGCATGTGCAGTAGCCGTAACAAGCTGGAAAAGCAcactttttgtgcattattgagcCAAATGTTCTAGCATGTCTTCCAATCTAGATTCTTTTTTAGACGTTTGTACCTCAGGGACTTGATACTTGACttaaacctttaataaacttaGACTTACACTTACTTCCAGAGGCTTAGTTCATACTTTTGTACCTCAGGGACTTTaatctagaccaggggtgtccaaactacggcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201133 True 952 lncRNA 0.40 3 2132945 2134094

Neighbor

gene id symbol gene type direction distance location
LOC103031003 NA coding upstream 172400 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 230491 1897473 ~ 1902454 (+)
LOC103035142 phb2a,phb2,LOC108440869,LOC107653518,LOC100703857,LOC107564245,LOC101465856,LOC107705310 coding upstream 246364 1867123 ~ 1886581 (+)
LOC103034819 LOC108440876 coding upstream 461703 1639309 ~ 1671242 (+)
LOC103025667 wdr33,LOC107695163 coding upstream 540445 1552795 ~ 1592500 (+)
LOC103035460 NA coding downstream 94432 2228526 ~ 2261643 (+)
LOC103030361 LOC108430157 coding downstream 663768 2797862 ~ 2891311 (+)
LOC103027018 LOC108430159 coding downstream 803207 2937301 ~ 2967577 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 894289 3028383 ~ 3139358 (+)
gata6 gata6 coding downstream 1064691 3198785 ~ 3207918 (+)
G148605 NA non-coding upstream 4213 2126045 ~ 2128732 (+)
G148602 NA non-coding upstream 12826 2118680 ~ 2120119 (+)
G148594 NA non-coding upstream 39848 2092055 ~ 2093097 (+)
G148593 NA non-coding upstream 40101 2090353 ~ 2092844 (+)
G148592 NA non-coding upstream 41252 2089948 ~ 2091693 (+)
G148571 NA non-coding downstream 1356 2135450 ~ 2189287 (+)
G148608 NA non-coding downstream 78471 2212565 ~ 2266924 (+)
G148610 NA non-coding downstream 114247 2248341 ~ 2250594 (+)
G148618 NA non-coding downstream 230531 2364625 ~ 2367099 (+)
G148619 NA non-coding downstream 231814 2365908 ~ 2366671 (+)
G148599 NA other upstream 18480 2112673 ~ 2114465 (+)
G148442 NA other upstream 927545 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 935368 1194535 ~ 1197577 (+)
tnk2 tnk2 other downstream 159538 2293632 ~ 2403354 (+)
LOC103027938 NA other downstream 860112 2994206 ~ 3010066 (+)
G149226 NA other downstream 1857716 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 1992855 4126949 ~ 4131384 (+)
G149256 NA other downstream 2025106 4159200 ~ 4160106 (+)

Expression


Co-expression Network