G148975


Basic Information

Item Value
gene id G148975
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2499737 ~ 2503443 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201684
atttttagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattagggcccgagcactgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattattattattattattattattattattattattattattattagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattattagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattattattattacgctTCTTGACCCTTTCGCccatttttgaggcatttcTGATACTGGAAAActcatgcattttggcacagGCCTCAAACTTGGCGAAAATTTAAAAGTTCCACAGAGCTTGGACTTTGGCGTGGTtcaggagctctatagcgcccccaaacgtCGGCAGTGGCCGGGATGAAGTTTGTCCAATGTGCACCAATTTTGGTACGCTCATTGACCTCCTCATAAAGAACAAGGATCACTTGGATttatttgactccgcccaacaggaagtcggccattttgacaggaagtcgcaaaaaaaaaagtttccggCTGGTTTTCGGAGGGGTTAAGATTAttgaaaactcctaaaattttacagaCCTATTTGGCTTAGGCCATACTTTGACCTTAAATTGAAATTTTGTATATTCGTGTgtcatcagctctctagcgccacctatttcGTATGACATTTTTGGAAAGCGCTCAGCCTCTTGACaattggcagattcaataagGCCTCGAAGTGACTTagatatatattgtcatttttgtcgtgtgtagctagatgactctacagcgccccctatttggttCGGCTAATAAATTAGCCGTGGCCTTCTCAAAAATTCTCAGATATTCTCGATTTTTGACAGAAACATAGACAGTATGATTCTGCACATATTAGCAATTAGAATacattagctccgcccaacaggaagtcggccattttggaatttgtggaatttttacatatttttcacaaactcattcgaactcctcctagagtctttgtcagattacctctaaattgTCAGTGGATAGTCCCCAGACATACATGGtgctaaattgcgaaggaatagtcgatagctgaaacgatgacgtaatggcgggcaattgatttaatggagacacaacactaaaccaaacagaaacaTTAGCATGATCAGAACacagctgcttggaaattcatgaaacttggcaaaaacataaaagacatcattacacacgttttcagtgttgatatgattgactccgcccaacaggaagtcggccattttgaaaaacgtgcattttacacacattttttgcatactttgtcgaactcctcctagggaatttgttgaatactcttgatatttgtcagcaataaactactaccatccgtgatgataaattgcgaaggaatagtcaatatcttaaacgaggacgaaatggcagacagttgaattgcttgagataccccattaaaacaggaagtgaatacattctggtgttggtaggtgtttgaggaggttaaacaggttgaacactcacgaaactttacaggcctgcttgatttaagcggTCCTTTGATTAACaattgaaatttcatatatacatatttcattggctctatagcgccacctaggtttcaatgcatatttgacattacgggaatgctcaaaacctcttgaaaattgacagattgcataagacctaaaaacactttacaaatattttgacaattttttcatgtatagctagcggactctacagcgccccctaatttgttcatttaataaattagctgtggatgtgtcaaaatttgtctaatcttctcaaattttggtaggatcgtagatagtatgaccctgcacatatttgcaattggcttgtattagctccgcccaacaggaagtgaatacattctggtgttagtaggtgtttgaggaggttaaaaaggttgaaaactctcgaaaatttacaggcctgcttgaatTAAGCAGTactttcatctgaaattaaaatttcttgtatacgtatttcattggctctatagcgccacctaggtttcaatgcatatttgacattacgggaatgctcaaaacctcttgaaaattgacagattgcataagacctaaaaacactttacaaatattttgacaattttttcatgtatagctagcggactctacagcgccccctattttgtttaggccattaaattagctgtggatgtgtcaaaatttgtctaatcttctcaaattttggtaggatcgtagatagtatgaccctgcacatatttgcaattggcttgtattagctccgccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201684 True 2582 lncRNA 0.41 2 2499737 2503443

Neighbor

gene id symbol gene type direction distance location
LOC103035460 NA coding upstream 238094 2228526 ~ 2261643 (+)
LOC103031003 NA coding upstream 539192 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 597283 1897473 ~ 1902454 (+)
LOC103035142 phb2a,phb2,LOC108440869,LOC107653518,LOC100703857,LOC107564245,LOC101465856,LOC107705310 coding upstream 613156 1867123 ~ 1886581 (+)
LOC103034819 LOC108440876 coding upstream 828495 1639309 ~ 1671242 (+)
LOC103030361 LOC108430157 coding downstream 294419 2797862 ~ 2891311 (+)
LOC103027018 LOC108430159 coding downstream 433858 2937301 ~ 2967577 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 524940 3028383 ~ 3139358 (+)
gata6 gata6 coding downstream 695342 3198785 ~ 3207918 (+)
LOC103030995 cables1,LOC108430174 coding downstream 792537 3295980 ~ 3359851 (+)
G148959 NA non-coding upstream 87660 2411703 ~ 2412077 (+)
G148611 NA non-coding upstream 90365 2403767 ~ 2409372 (+)
G148621 NA non-coding upstream 101008 2398075 ~ 2398729 (+)
G148618 NA non-coding upstream 132638 2364625 ~ 2367099 (+)
G148619 NA non-coding upstream 133066 2365908 ~ 2366671 (+)
G149008 NA non-coding downstream 376546 2879989 ~ 2914529 (+)
G149018 NA non-coding downstream 476064 2979507 ~ 3023397 (+)
G149019 NA non-coding downstream 502642 3006085 ~ 3009536 (+)
G149024 LOC108430171 non-coding downstream 520367 3023810 ~ 3027200 (+)
G149026 NA non-coding downstream 526287 3029730 ~ 3033067 (+)
tnk2 tnk2 other upstream 96383 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 306012 2003599 ~ 2193725 (+)
G148599 NA other upstream 385272 2112673 ~ 2114465 (+)
G148442 NA other upstream 1294337 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 1302160 1194535 ~ 1197577 (+)
LOC103027938 NA other downstream 490763 2994206 ~ 3010066 (+)
G149226 NA other downstream 1488367 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 1623506 4126949 ~ 4131384 (+)
G149256 NA other downstream 1655757 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 1789040 4292483 ~ 4386634 (+)

Expression


Co-expression Network