G148983


Basic Information

Item Value
gene id G148983
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3054681 ~ 3143912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201697
AATACTCTAAATAACCCTGATCAGTATAATTGTGTGCATCTTCCTAACTGCACATAAATAGACAGAaatgatatcatgatatacagtattgcttcatgattggtggaaacttcacactagacctcgagcagtttggactgtgtgtctctccactcttcctccagactctgatttcttaatttacaaatgaaatgtaaaatttactgatgatgagtgatggtttggagagacatgtcatctgctggtgttgatccactgtgttttattatctaaagtcagtgcagttttgttttcccacaaaatctgctgacaactttaatggagatgcagatttcattttccagcaggacttggcacactgcccacactgccataAGTACCACTTGGTCttatatgatattctaattttctgagactctgattttggggttttcgttggctgtgagccataatcatcaacaataaaagaaataaatgattaaaatagattcttctgtgtgtaatacatctatataataatgaaataaagtaacttttcaatgatattctaattttttgagatgcaagATCCAAGTCCTTCTCAGCTGCCAATTGAACATCacatcagtggttttaatgttatggctgatcgaTGTTTAAAGTGTATATACTAAACTCTGCAGAGGAAGCTATGGTTCATTTCATGCTGGTTAATATGCTTCTGCTTCTCCTCCACTGTGATGCTCGGACACTCTGGCAtcatctctttatttttgcaaGCCTCCTCagactcttcctcctcctcctcctcttcctcagttTTCCCATAAAAGTATTGAGCTATAAGGCCTTACTGCGAACACGTCCGTAGCCTCAGTATCGATCAGTGATCAGCAGGAGTGTTGCCGGCGTGGTGGAAGCAGAGAAAACGTCTAGAACACTAAAGCCTCTCGTCACCTTCTCGTCAAAACTGCCTGAGAACCATACGCTGCCATTGGTAGGTGGTGGAGTTTTTCTTCGTATCTACATTCAATGAATCCCCtttctttatttgtatgtatttccttcatttcttttactttgtttttcgTATATCATGGTTTTTAAGtcatggctggaatctgagaaCTGAGTCTGAAACATAACGTcataaaataacagtgttcaGCATTGTCTTGACCTCCATTCACTGTGGATCTTTAGTTATAGATTAGTGATGGTTTAGTTATGCTGCGTTCCATTGAGCTCGGAAGTCGCATCTTAAAACTGGGAGTGATTTCTaacttgtgtttttaaaatatttagaattatttCCAGTTAGTTAACCAATATGGAGTCAACCATTTGATTAGTCAATTGTTTATAGCAAATTTATCTGTTTTATGGCAAATCTAGACCAAATATATACTGCTCTTTATTTCCCAGCTTAGCATTGTTGATGcattaattcagtattttttatgCACAGGTGATCAGATGCACGAGTAAGAAATTGGATAGTACAATCAGGTGTATGCCTGATTTAATAGAACACAAATGGATATAATTACTGATAAACTCTATTAGAGATGCTAAAAttattgtaatactgtaatatttttcacactataaggaatACTTTGAATAAACCTATATTTTCTGtactattttcatacataaggtccactggattataaggcgcattatgcaacactagtaaggaacacaGATgtagccatgttttccttctaattcacctgtaaagctaagctaagtaaacaaaactgtagctgtttaaaatcaaacaagtgctggaagTTAATCTAAGCATATTTTtcacctgaaaactgtttatttgggtgagaaaaacGCTTCCATTTACTTAAAGTGCTACACCTAAATGTAACtaaatgttctggtaagccGGGGCGATATTAGCTggtggttcgtcccacgtagcttgttttaacatggtagaTATTCAGGCTACAAGACGATATACTCACCTtgaaacagtgaaagagctaaccAGCGCTCAGCGTTGTTAGCAGgtaaggctaatgctgctccagcagtgctagctggggttagcagcaggctacaggccggtaatactcacctctgaatggcgaaagagctagcgtttagcgtggttagcggctaatgctaatactgctctgctctcgagtctctgtgctggataactgaactgaaactcctgtataactctgtactttagcggagtgactttactgctccttaatacctgactggtagaattcatacataaggagcactgacgatttttgagaaaattaaaggattttactgTGCAAAAAATTCGGTACCCTCATCCACTTGAAGTGTAAGCAGAAAGCTGATCGAGTCTAATAACATGGCTGGACTTTATCTATAAACAGACGCCATGTTGAGTGTTATTATCCCTAATTGGGGCttaaaaatgtcagtttttcGACATTCGAGTTTTAATGGAACGCAGCATTACTTTCTACAGACTGACTACATTACAGTGTGCATGTAGACACATTTACTGTCTGAGAGAGTATTATCACTTTATTACTGTTGGTGGAAATACTTTGGAGGCCTGAAGGTTTCTTATTCTTAATGTCTTAAAATtgatttcatttttcttttagttttatttagttttaatctgTGCACACTGTGTTTTTTCACCAGTGTTGTCAATCAGTTCTCTACAGTCCTGCTGTGTTTTTCCGAggctgtattatattataaaccAGGCGtcggcagaaaaaaaaaagaagagagtcTGCTAATAACCattgatttttggattttcttttttagtttttgttttgttttgtttttttttttttttgttttttttattccaaaaataagaaaatgttaatattcttttttttttcggggATAAGGTGCTGTTTTACCTCTTTTGACTGtctctttatttatgttttcatCGAACTTAAGACTGAACTAGGGTGTACAATCTAATATAAGAAGCCAAGAAGAGGTATAAAAAGTTATTTGAATAGAAGAAGAGAATTGTCTTTTCTATGGTTACCAGCAAAGTAGGAAAGTAGGTTTTTACAGTCGTGTTCTTTTCAACTGTTTTCAACTCTGGACGTCTCCGATCGTCTTACCGTGTTTTTTTGTCacgagaaaaaaatgaaataaaataaatgtttgtagCCTAATATAAAGAAGACTATTTACCAAAAACACGCTGTATCTTTCTGCGCTTGTTGTCcaatttagcatttttagtTTATCTTTTACGAAGAaaagataatgataatgatgatgatgatgatgatgaggatttTTCCAGATCTTCATCCTCTTCATCCTGCCGACAGTGTTTCATAAACCATGCACCCGAAACTGCGATCTCTGtatttgtatattattattatcattattaaacaTACGGAGccctttttatttcatgtagTTCAATAGAAACAGcatagaatgttttttttttatggacaaaataaaatacataaataactgaatgaataaatgaataaacacatgcATTAAAAAGTAGCTTCATACTTTGCCTTTTTAAGATTTTGTATCATTTCCAGTCATCTTGTTAACATACTCAATGCTTAGATGCACTAATGTACTTTAATGgtagtattgtattgtatgtacCGTCACTGTTACTTAAAGGCCTATTTTGTACCTTATTttcagtacataaaaaaaaaacttccaggTTCAAAGGTTTTTTCGATACGTCTTCGTTCCTTCTTTGTTTGGCATGAATGTTTGTTTGATGTATGCAGtacatttttcatggaaaacagcTGTTCACTATGTATTGCCAAGtgcttttaaaaagaaatgcatTGCTGAATAAAGATCTAATGGAACCACAG

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU201697 True 3854 lncRNA 0.35 2 3054681 3143912

Neighbor

gene id symbol gene type direction distance location
LOC103027018 LOC108430159 coding upstream 87104 2937301 ~ 2967577 (+)
LOC103030361 LOC108430157 coding upstream 163370 2797862 ~ 2891311 (+)
LOC103035460 NA coding upstream 793038 2228526 ~ 2261643 (+)
LOC103031003 NA coding upstream 1094136 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 1152227 1897473 ~ 1902454 (+)
gata6 gata6 coding downstream 54873 3198785 ~ 3207918 (+)
LOC103030995 cables1,LOC108430174 coding downstream 152068 3295980 ~ 3359851 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding downstream 441333 3585245 ~ 3632868 (+)
pter pter coding downstream 535084 3678996 ~ 3682521 (+)
LOC103047776 NA coding downstream 809491 3953403 ~ 3998059 (+)
G149026 NA non-coding upstream 21614 3029730 ~ 3033067 (+)
G149027 NA non-coding upstream 22552 3030397 ~ 3032129 (+)
G149024 LOC108430171 non-coding upstream 27481 3023810 ~ 3027200 (+)
G149018 NA non-coding upstream 31284 2979507 ~ 3023397 (+)
G149019 NA non-coding upstream 45145 3006085 ~ 3009536 (+)
G149040 NA non-coding downstream 79505 3223417 ~ 3274194 (+)
G149109 NA non-coding downstream 140812 3284724 ~ 3285222 (+)
G149126 NA non-coding downstream 222540 3366452 ~ 3368137 (+)
G149130 npc1,LOC107747515 non-coding downstream 238031 3381943 ~ 3384833 (+)
G149142 NA non-coding downstream 277318 3421230 ~ 3463220 (+)
LOC103027938 NA other upstream 44615 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 651327 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 860956 2003599 ~ 2193725 (+)
G148599 NA other upstream 940216 2112673 ~ 2114465 (+)
G148442 NA other upstream 1849281 1200285 ~ 1205400 (+)
G149226 NA other downstream 847898 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 983037 4126949 ~ 4131384 (+)
G149256 NA other downstream 1015288 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 1148571 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 1361801 4505713 ~ 4512310 (+)

Expression


Co-expression Network