LOC103027938


Basic Information

Item Value
gene id LOC103027938
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2994206 ~ 3010066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201746
ATAATatacttttattcattttcagcATCCCATTCATCACAATCTTCAGCTTCACGAACTTCAGCGTGGTTCAACTTAAAACTCAATCAAACCTCAGGCTTACAGTGCTCTATACATCTATATACAAAGAGATAAAATGTTCCCACGCAATATTGTTCatacggtatatatatatatacacagtacacacgTGTAACTTAAGGAAGACATACATATTTATGAAGGCGGAGTCTCAACTCAAAGGTAGACCTACATAAATAATAAGAACAGTAtaggaaagaaacagagagattaaACCAAACTGTACTGAGATTTgagaataatctaataatgtgtatttaactataactaatgcagcaatggatatatatatagcatagaCAGCCTGAAACTTCAGCTTCTACACACCTAGAGTGGGCTTTTAGAATcgggcatgccaaaagtcatggtcctgatgagtgccagtttcatcatattgttttaaataatctttGCGACACAACAGTGTTTGTAATTTGATCACAGTGTTACCTTAGGGCCTGGCCTTTGAAAAATAACCTTACAAATaacctgtgtaagttgtgaggtgctatcttgtgagttaTCTTGTGTTAGAGCGAGACCTATACGGAAGTTTCATTTCTAAAAGTTTCAAAGTGTCATGCATGTACAAGAATACACAATAGAAGGTGCTAATTACAGCCCGCAGTAGACAGCACAGTAGTCCCATGACttatggcatgtcagtgtgtgtcaaaaaatttggacacacatttttttttgttccctacattgtaaataaatagtaaagtgattcagactattactaacacataaggaatcatgtagtaactaaaaagtgttaaacactagctgttaacttgcggtttctgaagctggtaacgagtcctgatgagtgccagtttcatcataacattttttatggtctttgaagtgactgcacttgagaatacatTCTaaattcttgaaatgtttcagattgactgaccttcatttctttaggTATTTCTTTAAGGaaactcaagtaattaactcttgacgagttcagcacagctgttaactgaaagcaatTCTATATATGTATCACTCTAGaaatttaggtgctcttatctggggagctgttaacttgcagtttttgaggctggtaactctaatgcaCAGagagaactcttgctcttcctttcctggggtgtacctgatgagtgccattttaatcatgtttttgataGTCGTTGCGGTGagtgcacttgaggatactttctaaATTCTTGAAATGTTctgaattgactgaccttcatttttttaaaggtatattttatttacttagttgagtagttcttgcttctcataatctggattagaacattactcaaatattcactattcactgtatacctgtaactctacctcttcattactttactttaactgatgctctcaaacactttattaagagacaagaaattcaagtaattaaaggataacttttttttgacttttgttgtagtaaaacatgataaagagtactaacctttgttgaataggcctcctctgctctcccacagctttctcaGACTGTACCATAGCCTAATCTCCGAGCTACACTATAGGTTGTaatcagtggtttttaatatgcttttttgtgcactttttaagtcattaatgcctagttttaaatgtcagtgctctccagattctaccaatgaggtgtggagctactttgagctctggaaaacagtgtaaaaagattATTTATCAGGGGCAAATTATGCCACAAAGCTCttgttgtaaagagtgctgggcaaaaagcacaacatttctggatctcagaaagctgcaggagagcagaggtgtgctattcaacaaagattAGTACTCTTcatcacattttacacagtaaagTTTTCctttaactgaaagcctgaattccaggtgactctacctcataaagctgactgagaaaatacagcctatatgtgcaaaactgtctctatctaagcaagagaagaatctaaattataataaaacatattctggttgtttttaacactttttggttACTAAATACAAACTCCCTTTGTTTTCTTCACAGTTttaatgactttagtatttatCTACAATGCAGGAAATCTAAGGTGTGCctgaacttttgactggtacagtaaGACAGATGCGACGGATACTGTACATTTGTGATGTCCAGATAGGCAAATCCAATCtgaatcctttttttttctccaaacaaTAGAGATGCCCACTAAAATTCAATAGCAATGATCCTGATTGGTTTGCAGATTAATGAAGAACTACTGTATGAAGTGACAGAAAGTAGACTGTTGAAGCAGCATTATTTCACAGGCAGGTAAACTGAAACAGTACAAACTGTAAGCATTACCACTTACCAAAGTGCCTCGAGACGTCCATCAGTCTCTCAGTGATAATCTGTACATTCCCTTACGCGTTACTGAAGGCCACTACTACTACAGACCTCCTCAGCGAAACTCTCAGACAGCTTTGGCTAAACAGGAGTGACCAGCAAGAACATTAAGTCTGATTATTTATGAACTAAAAGCTGGTTTATAAAGATCTGTGTGTCTCCCAACtttgagtgtgtttacatgcactgaaAATTCAGATTACTGCAGAAAAGTTTACTGTGGAGTTATTTTTAGCCAGTTTTAGATTTTTGCAATAAACTCATGCAAAAGCCTTAAAAAAAcgtaatttcctttttttttttttaacaaatcaaACAGCAATAGATGCACATATGATTATACATCAGCTAGAAGATAAAGGTTATTTAAAttcttcagttttagtgtagcTCTGAAAATGTTTGGCTCTATGTGCAGTTGTAAGgttttttcacaccagcactacttgtggtgagaatgtgatcagTCCTgctctacactgcaaaaatacagctatagaataaaataagagagcacgtaaaaatgatgagtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactaaaccaggagtaaaggcataaagttatccaacagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgattt
>TU201747
ATAATatacttttattcattttcagcATCCCATTCATCACAATCTTCAGCTTCACGAACTTCAGCGTGGTTCAACTTAAAACTCAATCAAACCTCAGGCTTACAGTGCTCTATACATCTATATACAAAGAGATAAAATGTTCCCACGCAATATTGTTCatacggtatatatatatatacacagtacacacgTGTAACTTAAGGAAGACATACATATTTATGAAGGCGGAGTCTCAACTCAAAGGTAGACCTACATAAATAATAAGAACAGTAtaggaaagaaacagagagattaaACCAAACTGTACTGAGATTTgagaataatctaataatgtgtatttaactataactaatgcagcaatggatatatatatagcatagaCAGCCTGAAACTTCAGCTTCTACACACCTAGAGTGGGCTTTTAGAATcgggcatgccaaaagtcatggtcctgatgagtgccagtttcatcatattgttttaaataatctttGCGACACAACAGTGTTTGTAATTTGATCACAGTGTTACCTTAGGGCCTGGCCTTTGAAAAATAACCTTACAAATaacctgtgtaagttgtgaggtgctatcttgtgagttaTCTTGTGTTAGAGCGAGACCTATACGGAAGTTTCATTTCTAAAAGTTTCAAAGTGTCATGCATGTACAAGAATACACAATAGAAGGTGCTAATTACAGCCCGCAGTAGACAGCACAGTAGTCCCATGACttatggcatgtcagtgtgtgtcaaaaaatttggacacacatttttttttgttccctacattgtaaataaatagtaaagtgattcagactattactaacacataaggaatcatgtagtaactaaaaagtgttaaacactagctgttaacttgcggtttctgaagctggtaacgagtcctgatgagtgccagtttcatcataacattttttatggtctttgaagtgactgcacttgagaatacatTCTaaattcttgaaatgtttcagattgactgaccttcatttctttaggTATTTCTTTAAGGaaactcaagtaattaactcttgacgagttcagcacagctgttaactgaaagcaatTCTATATATGTATCACTCTAGaaatttaggtgctcttatctggggagctgttaacttgcagtttttgaggctggtaactctaatgcaCAGagagaactcttgctcttcctttcctggggtgtacctgatgagtgccattttaatcatgtttttgataGTCGTTGCGGTGagtgcacttgaggatactttctaaATTCTTGAAATGTTctgaattgactgaccttcatttttttaaaggtatattttatttacttagttgagtagttcttgcttctcataatctggattagaacattactcaaatattcactattcactgtatacctgtaactctacctcttcattactttactttaactgatgctctcaaacactttattaagagacaagaaattcaagtaattaaaggataacttttttttgacttttgttgtagtaaaacatgataaagagtactaacctttgttgaataggcctcctctgctctcccacagctttctcaGACTGTACCATAGCCTAATCTCCGAGCTACACTATAGGTTGTaatcagtggtttttaatatgcttttttgtgcactttttaagtcattaatgcctagttttaaatgtcagtgctctccagattctaccaatgaggtgtggagctactttgagctctggaaaacagtgtaaaaagattATTTATCAGGGGCAAATTATGCCACAAAGCTCttgttgtaaagagtgctgggcaaaaagcacaacatttctggatctcagaaagctgcaggagagcagaggtgtgctattcaacaaagattAGTACTCTTcatcacattttacacagtaaagTTTTCctttaactgaaagcctgaattccaggtgactctacctcataaaactgactgagaaaatacagcagagatgtgcaaa
>XM_015608782.2
AGGCTGATTGGTGGAAGCTTGGATGATAGGATGCTTTTAGGATGCTTTCCCACCATTATTATTCAAATAGGCTATTAGCCAATGATTGGTGAGTCTTAAAAGTGGGTCTACTTTTTAAGTCCTCCATACCAGCCATTTGAAGTTTTTCGCAACCATGAGGTGCACTACAAACTGCTTGGAAAAGCGAGTGCGGCTTGGCTTGGAAAGAGTTGGCAAGTTTATCGGCCTCCATCCATGGTGGTTCATCTTCGTTCCTCTCACTCTGGCTGTATCTCTTGGATGGGGCTTCTGCTTTCTAGAAGACCGAAAATCCAACGATATAGTGCAGCAGTTCACGCCAATGGATGGACGCGCCAAGACAGAGAAACACTTCTTTGAAAGCTATTTTCTGCACAATACGGAAAATTATGAAGATTTCTCCAGTCTACGGTTGACTACAGATGGAGTTTATGGAGCTCTGATCTTCACCAGCGACACCAGTGTTCTCAGCATGGCTGCACTTGAAGAAATTTTGCTTGTAGATGCCAACGTGAAGGGAATTACCATTGGGTATGGAACAGAAGAGGAATATTCGTATGGAGATATTTGTGCCAAAGTGAATGGCCACTGCCATCCCAATGTTCTCCTGGAAATCCTGGATTATGATGCCAACAATATTAATGTTCTAAACCTGACATTTCCTAGTTTTGACTCCATCAGAATGGGGAAATTATCACTGGAACATCTGCTAGGTCAGGTGGAGGTAGACAGTGCTGCAGTCGTCCAGAGTGCCAATGCATTGAGACTGTTCTACTACCTGCAGGATGTCAATGCTACTCTTGGAGATTCTTGGCTGAACAAATTTGTTGAGTTGATGACCAATGTAACAACTTCCATCACACAGgtaTCCTATTTTACCTCCATATCCAGGCAGCAGGAGTTTGAGAAAAGCACCAAGTCTGTCACTCATCTTTTTGCGATTACCTACTTCATCGCTATCCTGTTCTCAGTCCTGTCATGTGTAAGGTTTGATAATGTGAGGAATAAAGTGTGGTTGGCCTGTCTTGGAGTAATCTCGGCTGGTCTGGCAGTGCTCTCCAGCTTTGGGTTACTTCTACTTCTGAACGTTCCCTTTGCCATAACTGTGGCATCATCTCCGTTCCTGATACTCGGAATCGGCATTGACGACATGTTCATCATGATCTCCTGCTGGCAGCAGACCAACGTCCACGACAGTGTAGAAGACCGCCTTGCTGCCACCTACAAAGAAGCAGCCATTTCCATCACAATCACCACCCTGACCGACGTGCTGGCCTTCTACCTCAGCTTCAGCAGCCCCTTCGGATCGGTGCAGTCCTTCTGCCTGTACGCTGGCACTGCCATCCTGTTCTGCTACCTCTACAACATCACCTTCTTCGGTGCCTGCTTGGCTCTGAACGGCAAACGGGAAGGAGGCAACCGCCACTGGTTGACCTGCATGAAGGTTCCCGAGGATTGTCCACCGGAAGCTTCCAGAGGCTATATCGCATGTTGCGTTGGAGGATCTTACGACCACAAAACTGGAGCTGAGGAGGAACATCTGATGCAGGGGTTCTTCAGGAAGTACTATGGACCATTTCTGACCACGGTGTGGGCCAAAGCTGCTGTGATTGTTCTTTATATTGGATATATTTCCGTTAGCGTCTATGGATGCACGACAATCAAAGAAGGCATTGATCTCAAGAACCTGGCAATCGATCAGTCGTACCTGGTGCAGTACTACGAAGCTGAAAAGGAATACTTCCATAATTATGGTCCGATTGTGATGTTGGCTGTCAATGGTTCATTTCCATACTGGGATGAAGCTAAACGAGATCTTCTAGAGTCTTGCATTGAAGAATTTAAAGCTCTGACCTTCATAAGCGATTTGTCCGTCTCTTGGCTTCATTCGTTTGAGAGGTACGCCAAGCAAGAGAACCTGAACATCACCACAGAGGCTGAGTTCAAGAACCATCTCCAGACCTTCCTACAGCGACATCCGACTCTCAGATTGGACGTTAGCTTAGCCAATGAATCCATACAAGCCTCACGTTTCTTCCTCAAGACGTCCAAGCCACCGTCTGAGAAGATAATGCTACAATCCTTGAGAGAAACTGCTCAAAGCTGCGAGGTTCAACCTCTAGTCGTCTACCATCCAGCGTTCATATACTACGATCAGTACACCGTGATCGCAAGCAACACCATCCAGACCGTTAGTGTCGCAACCGTAGTCATGCTAGCCATCTCGCTAATCCTCATCCCCAACCCAGTCTGTGCCTTATGGGTGGCGTTCGCCATTGCATCGGTTATCGTAGGAGTCGCAGGCTTCATGGCACTGCTGGGCATCAACTTGGACTCCATCTCCATGATCAACCTGGTCATCAGCATCGGGTTCTCCGTGGACTTCTCGGCACATATCTCCTACACTTTCGTGTCCAGCACTAAGGCCAGCGTGGACGAGAAGGTTGTGGATGCACTGTCGAATCTAGGGTACCCCATACTGCAGGGGGCGCTGTCCACGATTCTAGGGGTGGTGGTGCTCTCAGTGTCGGTGAGCTACATCTTTAGAACGTTTTTCACCATCATGTTTCTGGTGATTTCCTTTGGGCTCCTTCACGGTATTGCTTTCATCCCAGTGTTTTTAAGCTTTTCTCGATTTTGCAGCAAATGATGAGATCTTTATTTTGATACAAAAGCCTTATCCAGATAGGATTAGTGAGAAtaatacaggctgaattatctactttTATCTACTGAATTATCTACTCTATTTTTtggctgaactctgtggtcctctaGTAATTTTCTTCCTGTCCGGACGcgcatctctgagtttcgtcacctcacgtttaataaaatagctatttgtccactgcacCGTAactacactttgggcgcgcgtTTCCAGGGAAATCCTGGTCAACataacagcgagtggaaatggaggagctactgaaatcgatgtcatgtgactgagaaagctaAAAAATTCACTGGTCCTccgtttttttcaattgcagttcggatgcaggagttttatcactgagtagaagtgtgaaatattttacacaaacgTCCCCCTGTGAAACTAATCTAATCCAGGATTGAGTGATGGAAAAAATTGTATCTTTGTATCTTTCATATAGTTAAAGCAGCAGCCCTcattaatggtatcagtgtccTGGAATGATCATGCTTGCAACATCTAATATGTCCACCCTGAAAAACAGAATGGTCTGGTaggttgttttaaaaaaaatgtcataaattaaatgaaaactatacttataaaaatgtatttactgtcattaaactgtattaaaagtactcttgCATATGTTCTGTACTGTTCCATATTCTCACCAGACAGAGTCCCTCTATGCTTTATACttattggtttgtagaatattAGTTATAGACCAAATAAGGCAGGAGTGAAAACATCCTTACAGGCTTTTTCATACAGTGTTTCTCTTCTTCCCAAATCAATGAATCACATTTATGCATCATCAgtaaacatgctgttttttttttctttttattctgctATGTGTATGATCAGGAACCAATAAACACCTTCAAATCATAGCTTATAATatacttttattcattttcagcATCCCATTCATCACAATCTTCAGCTTCACGAACTTCAGCGTGGTTCAACTTAAAACTCAATCAAACCTCAGGCTTACAGTGCTCTATACATCTATATACAAAGAGATAAAATGTTCCCACGCAATATTGTTCatacggtatatatatatatacacagtacacacgTGTAACTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201746 False 3194 lncRNA 0.36 2 3002422 3005919
TU201747 False 2004 lncRNA 0.36 3 3002422 3010066
XM_015608782.2 True 3790 mRNA 0.44 4 2994206 3002622

Neighbor

gene id symbol gene type direction distance location
LOC103027018 LOC108430159 coding upstream 26629 2937301 ~ 2967577 (+)
LOC103030361 LOC108430157 coding upstream 102895 2797862 ~ 2891311 (+)
LOC103035460 NA coding upstream 732563 2228526 ~ 2261643 (+)
LOC103031003 NA coding upstream 1033661 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 1091752 1897473 ~ 1902454 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 18317 3028383 ~ 3139358 (+)
gata6 gata6 coding downstream 188719 3198785 ~ 3207918 (+)
LOC103030995 cables1,LOC108430174 coding downstream 285914 3295980 ~ 3359851 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding downstream 575179 3585245 ~ 3632868 (+)
pter pter coding downstream 668930 3678996 ~ 3682521 (+)
G149008 NA non-coding upstream 79677 2879989 ~ 2914529 (+)
G148975 NA non-coding upstream 490763 2499737 ~ 2503443 (+)
G148959 NA non-coding upstream 582129 2411703 ~ 2412077 (+)
G148611 NA non-coding upstream 584834 2403767 ~ 2409372 (+)
G148621 NA non-coding upstream 595477 2398075 ~ 2398729 (+)
G149024 LOC108430171 non-coding downstream 13744 3023810 ~ 3027200 (+)
G149026 NA non-coding downstream 19664 3029730 ~ 3033067 (+)
G149027 NA non-coding downstream 20331 3030397 ~ 3032129 (+)
G148983 NA non-coding downstream 44615 3054681 ~ 3143912 (+)
G149033 NA non-coding downstream 123130 3133196 ~ 3134344 (+)
tnk2 tnk2 other upstream 590852 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 800481 2003599 ~ 2193725 (+)
G148599 NA other upstream 879741 2112673 ~ 2114465 (+)
G148442 NA other upstream 1788806 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 1796629 1194535 ~ 1197577 (+)
G149226 NA other downstream 981744 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 1116883 4126949 ~ 4131384 (+)
G149256 NA other downstream 1149134 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 1282417 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 1495647 4505713 ~ 4512310 (+)

Expression


Co-expression Network