G149018


Basic Information

Item Value
gene id G149018
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2979507 ~ 3023397 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201749
GAGCCAAGAGTGTATAGACAGATGGATAATTGTTTTATGCACATGCCAATAATTCGATATAATACCCCTGGTCCAAGGATAACAGGTCATAGATGAAGCATACATATATAGCAAggcagccaaaaaaaaaaaagaacaactaAAAACAACCAAAAGTTCTTTTTTGTCATAATAATGTTATTGCACCTTTAAAAGCATCATGTTCTACAGAAGACATTAAATATCTGGCTCATGTCAGGCTGGCCAGCACGTATTATATAGTCAATAGTCAATAGCTAATAAAAAAGACAACCCTCAAACAGCATTCCTTTAACTGAGCTTTGATTAAGCTTAAGATTAAGATTTTCTGATGGAATATTTCTGCGAAAGTAATGGACAACCATGCAAAGCGACATCATTTACGAGGccacacactgtttaaaaaaaagaaaaagcgtGTAGtcaaaaaagctaaaaagctaaagctaaagctaaaaaaaaaaaattaacatttaacatcagggtaataataataataaaaagaataaaaataatgagaataAAGGAAGGAAACAGACGTACGTTAATAGagaattacacattacacagcAGAGAGCTTAGCTAAGCTTACACAGTATAACGTCGTCGTGAAAACTTAGGAAGGTACAGACCGTACAGGACATTTTTAATGGCCGTCTGCCTCTGGATCGAGTTCGCCGGGCCAAAAAGATGTCCGTTCCCAAAAACTACTCCCAAATATTTCCGCTATACTGGCCCAAAATCATGGTTTTCGAAGGTAGCGCtcccaaagagagagaaaaatgactcaatctctttctatttctggtGTAAAAGGACTTTTATGGATATTTAGGGCTTTGTAGTTTAGCTGTAGATGTTTTAAATAGTGATACAATTataaatctgatgatgtttcaTGGATACATATGTATAGGACGTGATACAGAGGACATAAACTGAAGTGTGTGAAGACCAGGAAACACTGAGTGACGTAAAGaagagtgtaagtgtaagaagTGTGCAAATGTCTGAGCTCCCTCAGCGCGAGCAGCGCCGGTGGGAGCGGACCTGGacctgctgctctctctctctctctctctctctctctctctca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201749 True 1114 lncRNA 0.38 2 2979507 3023397

Neighbor

gene id symbol gene type direction distance location
LOC103027018 LOC108430159 coding upstream 11930 2937301 ~ 2967577 (+)
LOC103030361 LOC108430157 coding upstream 88196 2797862 ~ 2891311 (+)
LOC103035460 NA coding upstream 717864 2228526 ~ 2261643 (+)
LOC103031003 NA coding upstream 1018962 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 1077053 1897473 ~ 1902454 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 4986 3028383 ~ 3139358 (+)
gata6 gata6 coding downstream 175388 3198785 ~ 3207918 (+)
LOC103030995 cables1,LOC108430174 coding downstream 272583 3295980 ~ 3359851 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding downstream 561848 3585245 ~ 3632868 (+)
pter pter coding downstream 655599 3678996 ~ 3682521 (+)
G149008 NA non-coding upstream 64978 2879989 ~ 2914529 (+)
G148975 NA non-coding upstream 476064 2499737 ~ 2503443 (+)
G148959 NA non-coding upstream 567430 2411703 ~ 2412077 (+)
G148611 NA non-coding upstream 570135 2403767 ~ 2409372 (+)
G148621 NA non-coding upstream 580778 2398075 ~ 2398729 (+)
G149024 LOC108430171 non-coding downstream 413 3023810 ~ 3027200 (+)
G149026 NA non-coding downstream 6333 3029730 ~ 3033067 (+)
G149027 NA non-coding downstream 7000 3030397 ~ 3032129 (+)
G148983 NA non-coding downstream 31284 3054681 ~ 3143912 (+)
G149033 NA non-coding downstream 109799 3133196 ~ 3134344 (+)
tnk2 tnk2 other upstream 576153 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 785782 2003599 ~ 2193725 (+)
G148599 NA other upstream 865042 2112673 ~ 2114465 (+)
G148442 NA other upstream 1774107 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 1781930 1194535 ~ 1197577 (+)
G149226 NA other downstream 968413 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 1103552 4126949 ~ 4131384 (+)
G149256 NA other downstream 1135803 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 1269086 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 1482316 4505713 ~ 4512310 (+)

Expression


Co-expression Network