G149019


Basic Information

Item Value
gene id G149019
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3006085 ~ 3009536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201750
ctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagataaactgattcagaaactgaagtgctctcttaatttttttccagatctatATATGTGCTGGTTTGAATTTACCTTCTTGCTCCCTGTCAGACAGTTCTGACCAATCagtggtgtccaaacttttgactggtactgtaagaCAGATACAGCATATGCAGATACGTTTATGCTGACCAGATAGGCAAATCCAATTTGATCAATTGCAAACAACatgctcacatggtttgtttgcgcgtttaggtttgtgcctgtgtgaaaacaaaccaaaccaaagggAAAACGCTTCAGAGAAACGaagtacaggtgtgaaaatagctTTCAAAGtaaaactctggtgtaaaatagacttttgctgtagtaaaacatgataaaaaagtgcTTCTGCATTCTGCATAGTGTAACTCGTGTtacgggatgtaaacagtggtttttaataaactttttgtgcactttttaagttattaatgctttgttttaaatatcagggctctctggattctagtaaggaggtgtggagctactttgagctggataacggtggaaaaagcggtaaatttatcagggtaaattatgcaccgtatcacccagtctgaagggtgtttggacaaactgttaaatttTCTGGTtttcagaacgctgtgggagaacagaggtgtgctattcatcaaagataagaactttttatcatgttttactac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201750 True 768 lncRNA 0.36 2 3006085 3009536

Neighbor

gene id symbol gene type direction distance location
LOC103027018 LOC108430159 coding upstream 38508 2937301 ~ 2967577 (+)
LOC103030361 LOC108430157 coding upstream 114774 2797862 ~ 2891311 (+)
LOC103035460 NA coding upstream 744442 2228526 ~ 2261643 (+)
LOC103031003 NA coding upstream 1045540 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 1103631 1897473 ~ 1902454 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 18847 3028383 ~ 3139358 (+)
gata6 gata6 coding downstream 189249 3198785 ~ 3207918 (+)
LOC103030995 cables1,LOC108430174 coding downstream 286444 3295980 ~ 3359851 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding downstream 575709 3585245 ~ 3632868 (+)
pter pter coding downstream 669460 3678996 ~ 3682521 (+)
G149008 NA non-coding upstream 91556 2879989 ~ 2914529 (+)
G148975 NA non-coding upstream 502642 2499737 ~ 2503443 (+)
G148959 NA non-coding upstream 594008 2411703 ~ 2412077 (+)
G148611 NA non-coding upstream 596713 2403767 ~ 2409372 (+)
G148621 NA non-coding upstream 607356 2398075 ~ 2398729 (+)
G149024 LOC108430171 non-coding downstream 14274 3023810 ~ 3027200 (+)
G149026 NA non-coding downstream 20194 3029730 ~ 3033067 (+)
G149027 NA non-coding downstream 20861 3030397 ~ 3032129 (+)
G148983 NA non-coding downstream 45145 3054681 ~ 3143912 (+)
G149033 NA non-coding downstream 123660 3133196 ~ 3134344 (+)
tnk2 tnk2 other upstream 602731 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 812360 2003599 ~ 2193725 (+)
G148599 NA other upstream 891620 2112673 ~ 2114465 (+)
G148442 NA other upstream 1800685 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 1808508 1194535 ~ 1197577 (+)
G149226 NA other downstream 982274 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 1117413 4126949 ~ 4131384 (+)
G149256 NA other downstream 1149664 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 1282947 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 1496177 4505713 ~ 4512310 (+)

Expression


Co-expression Network