G149024 (LOC108430171)


Basic Information

Item Value
gene id G149024
gene name LOC108430171
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3023810 ~ 3027200 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201755
CACCATGTTTGTTGTGGAAGAAGGAATCAGTGGAAAGGTAGGAGGCCTTCCAGGGGTTTGATCCTGCTCTAGGAGGTGGGGATGAATCTTGAGTCACATAAGGCAACAGCCTGTCCACAAGCTTATCCAGCTGACCCGCTCCCAGCTCTGACAATCCGAGGTCCCTGAGGTTCAACACGGGCTCTGTACTGTGTAGCTCTTGTTCTGGGGCATTTTCTCTGTGCTGAGGCTTGACTGAGCTCGCCACTGAACCCTTCAAAGAGTGCAGGGCATTGATGAGGTGACTCAAAGGAACTGTTACCTGGGGCTGAACGGTGGACGACAGAGAAAACATATCCGATTAATCGATTAGAATCTGTACACGGCGCATAGAAATATGATATCTAAGACGATTAATCGATTAATTTCATAAATGTCCTCCGCGCTGCTAATCCAACCCCGCCAGCTAGCAGCGTTTCTACAGCAGCTTCAACACCGCTACCGCTCTCGCTAACAGCGCCCCTATCGGCGCCCTGCCTTACTACCAATACACAATAAtacaggatggatggatggatggatg

Function

NR:

description
PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201755 True 562 lncRNA 0.50 3 3023810 3027200

Neighbor

gene id symbol gene type direction distance location
LOC103027018 LOC108430159 coding upstream 56233 2937301 ~ 2967577 (+)
LOC103030361 LOC108430157 coding upstream 132499 2797862 ~ 2891311 (+)
LOC103035460 NA coding upstream 762167 2228526 ~ 2261643 (+)
LOC103031003 NA coding upstream 1063265 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 1121356 1897473 ~ 1902454 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 1183 3028383 ~ 3139358 (+)
gata6 gata6 coding downstream 171585 3198785 ~ 3207918 (+)
LOC103030995 cables1,LOC108430174 coding downstream 268780 3295980 ~ 3359851 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding downstream 558045 3585245 ~ 3632868 (+)
pter pter coding downstream 651796 3678996 ~ 3682521 (+)
G149018 NA non-coding upstream 413 2979507 ~ 3023397 (+)
G149019 NA non-coding upstream 14274 3006085 ~ 3009536 (+)
G149008 NA non-coding upstream 109281 2879989 ~ 2914529 (+)
G148975 NA non-coding upstream 520367 2499737 ~ 2503443 (+)
G148959 NA non-coding upstream 611733 2411703 ~ 2412077 (+)
G149026 NA non-coding downstream 2530 3029730 ~ 3033067 (+)
G149027 NA non-coding downstream 3197 3030397 ~ 3032129 (+)
G148983 NA non-coding downstream 27481 3054681 ~ 3143912 (+)
G149033 NA non-coding downstream 105996 3133196 ~ 3134344 (+)
G149040 NA non-coding downstream 196217 3223417 ~ 3274194 (+)
LOC103027938 NA other upstream 13744 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 620456 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 830085 2003599 ~ 2193725 (+)
G148599 NA other upstream 909345 2112673 ~ 2114465 (+)
G148442 NA other upstream 1818410 1200285 ~ 1205400 (+)
G149226 NA other downstream 964610 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 1099749 4126949 ~ 4131384 (+)
G149256 NA other downstream 1132000 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 1265283 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 1478513 4505713 ~ 4512310 (+)

Expression


Co-expression Network