G149027


Basic Information

Item Value
gene id G149027
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3030397 ~ 3032129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU201766
cacgtatataaaaaagtatgtaggcggcaattcacagaataacattaactaaatatgacatttagctacggaacgttagacaaacacctgaaagatcctgccgattttttctgttgtcatatcgtcttctttcactgcaacgcgtttagttcctctgaacaagataaaactctccatcctcaactccatccaaagcctacagcaatacagactgtgtagataacactgcagtgaactcccgcgcaacagaaacccaccaagaataaacaaatcagtaacttccggggcacacaaatgggtcaagttcaaaatcaaaatcaaattcggctcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201766 True 332 lncRNA 0.40 2 3030397 3032129

Neighbor

gene id symbol gene type direction distance location
LOC103027018 LOC108430159 coding upstream 62820 2937301 ~ 2967577 (+)
LOC103030361 LOC108430157 coding upstream 139086 2797862 ~ 2891311 (+)
LOC103035460 NA coding upstream 768754 2228526 ~ 2261643 (+)
LOC103031003 NA coding upstream 1069852 1956162 ~ 1960545 (+)
LOC111194472 NA coding upstream 1127943 1897473 ~ 1902454 (+)
gata6 gata6 coding downstream 166656 3198785 ~ 3207918 (+)
LOC103030995 cables1,LOC108430174 coding downstream 263851 3295980 ~ 3359851 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding downstream 553116 3585245 ~ 3632868 (+)
pter pter coding downstream 646867 3678996 ~ 3682521 (+)
LOC103047776 NA coding downstream 921274 3953403 ~ 3998059 (+)
G149024 LOC108430171 non-coding upstream 3197 3023810 ~ 3027200 (+)
G149018 NA non-coding upstream 7000 2979507 ~ 3023397 (+)
G149019 NA non-coding upstream 20861 3006085 ~ 3009536 (+)
G149008 NA non-coding upstream 115868 2879989 ~ 2914529 (+)
G148975 NA non-coding upstream 526954 2499737 ~ 2503443 (+)
G148983 NA non-coding downstream 22552 3054681 ~ 3143912 (+)
G149033 NA non-coding downstream 101067 3133196 ~ 3134344 (+)
G149040 NA non-coding downstream 191288 3223417 ~ 3274194 (+)
G149109 NA non-coding downstream 252595 3284724 ~ 3285222 (+)
G149126 NA non-coding downstream 334323 3366452 ~ 3368137 (+)
LOC103027938 NA other upstream 20331 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 627043 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 836672 2003599 ~ 2193725 (+)
G148599 NA other upstream 915932 2112673 ~ 2114465 (+)
G148442 NA other upstream 1824997 1200285 ~ 1205400 (+)
G149226 NA other downstream 959681 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 1094820 4126949 ~ 4131384 (+)
G149256 NA other downstream 1127071 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 1260354 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 1473584 4505713 ~ 4512310 (+)

Expression


Co-expression Network