G149221


Basic Information

Item Value
gene id G149221
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3998753 ~ 4003402 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU202019
TTTACAATTAACCATATTAGTATCAATATCAATACTGATGTAAtatcatatcgcccagcactagtgtgtatgtgtgtgttgtgtgtgtttcaggaggCTTCCGCCTTAAGTACGTTGCCCCACACTCTGCAGAAGTTCTGGATAAAGCTGTTTGACGGCGGAGAACCGAGGAACCCCTGTTTCACTTTGAGTAGAGTAACCTCCAGAGCGCCCCCTACTGTTAAAGCGATGGGATTATTTTTGGAACTGTTTGAATCAGCCCTTGACTTTACAAGCTGGATTTAATACAGACTCGCTGAGGATGCGGATAATGGACTACGCCAACTTCCATTGGTTGGTTTGTTCTTTTGGTTCCATTGGTTGGTTTGTTCTTtggtttcgtttttttttttttgttcattcatttgttcattCGTTCATTGGTTTTCCAGTATAGACTGCCATCCGTGACTCTTAAGGCCTGAGCCAAAGGACCCTCGAGCTTCTGTGtgaagatttattttaaaggtttgGATGCTGAGAGGATTATAAAGGAGTGATGCTTCCATTAATCTGAGATCATATCACCCAGGATTTCGGCCCTAAACGAGGAGAAATCGTGAATCTTAACTCGAGTACTTAGttgcctctcttttttttctcattttttttcatttgactcGTTTTATGGAGGCTTGGGGACATTTCTGAAGTTTTTATATCTTCGCTATGAGCAgctaagagttaaaaaaaagacgAAAAGACTAAAAACAGACTGGTTTACTCTTCATTTACTGTTCATttgatttaaagtttttttttttttttttttttttttgcttttttctttactttatttaatacaattccagaagcaaaaggtTGCATACATGCATATATTTGTGCCTAGTCATTTTTTGAGTATTGTTACAAAATAAGAGTCTTAGtttgtgtagaaaaaaaataataattaaaaagcaaCTATCCTTACTAtactaaaaaaagaagaagccaCAGTGAAACGTCCCTCTGTTTTATATGGACAATTTTTGGCGTGTGGTATTTTGTACTGATTCATGgaattaattgtttaaaatcgtgcttttattttgaagagcCTGTTGccttttgagaaaaaaaacaacccatACCTGCACATCTATATCTCTCTATAAATTTAGTTCCATAAGTTACAGTGTAAACGCTTGACCTCCTGTTTGACTCCATTAATGACAGGCCTTGCCTTtgatacttttttcttttttttattataaattattattaatattatttttattttttattttttgcatgtgcTGACCCaaattatttgagttatttgacTTATTGTTCCCGGGTTGCTGTACAGCTCTTCTAGAAGCTGTCTGAAGTCTTTATTAAGTATTTAGTTGGAAATCTCAGAATATCCTGCCACTTGTATTAGTTAAAGGTTTTAGAATGGGTGAAAGACGTTTAAGAAactgtactgtataaaataagagttgagttttttttgtttgttttattgtattattataataattactgttattatttagGCCTCAGAGTTTGTTTACAGTATTTCCTatgtaaatgttgatttaaatatGATGTACTGAAGAGGTCACGGTTTATCTCTGATCATATTTGCATTTTAAGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202019 True 1642 lncRNA 0.34 2 3998753 4003402

Neighbor

gene id symbol gene type direction distance location
LOC103047776 NA coding upstream 694 3953403 ~ 3998059 (+)
pter pter coding upstream 316232 3678996 ~ 3682521 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding upstream 365885 3585245 ~ 3632868 (+)
LOC103030995 cables1,LOC108430174 coding upstream 638902 3295980 ~ 3359851 (+)
gata6 gata6 coding upstream 790835 3198785 ~ 3207918 (+)
LOC103021386 NA coding downstream 117913 4121315 ~ 4123410 (+)
LOC111194481 LOC108433078 coding downstream 266615 4270017 ~ 4286199 (+)
LOC111194482 NA coding downstream 381457 4384859 ~ 4386588 (+)
LOC111194480 LOC108433077,LOC108280739 coding downstream 433466 4436868 ~ 4477488 (+)
LOC103045023 LOC108433075,LOC108280757 coding downstream 580911 4584313 ~ 4621712 (+)
LOC111194476 NA non-coding upstream 117478 3880132 ~ 3881275 (+)
G149195 NA non-coding upstream 228994 3756166 ~ 3769759 (+)
G149191 NA non-coding upstream 259181 3737361 ~ 3739572 (+)
G149175 NA non-coding upstream 272886 3701156 ~ 3725867 (+)
G149159 NA non-coding upstream 359799 3638075 ~ 3638954 (+)
G149239 NA non-coding downstream 27885 4031287 ~ 4033193 (+)
G149247 NA non-coding downstream 97544 4100946 ~ 4102869 (+)
G149251 mcm6l,LOC107757789,LOC108280894,LOC108433082,LOC107600254 non-coding downstream 110769 4114171 ~ 4115546 (+)
G149260 NA non-coding downstream 167682 4171084 ~ 4226395 (+)
G149278 NA non-coding downstream 281526 4284928 ~ 4341467 (+)
LOC103027938 NA other upstream 988687 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 1595399 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 1805028 2003599 ~ 2193725 (+)
G148599 NA other upstream 1884288 2112673 ~ 2114465 (+)
G148442 NA other upstream 2793353 1200285 ~ 1205400 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 123547 4126949 ~ 4131384 (+)
G149256 NA other downstream 155798 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 289081 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 502311 4505713 ~ 4512310 (+)
trnal-uaa_9 NA other downstream 521224 4524626 ~ 4524708 (+)

Expression


Co-expression Network