G149222


Basic Information

Item Value
gene id G149222
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3980794 ~ 4091841 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU202021
ttttttttgctgtttttacaaaattaaaaaaatactgctatatgtatttattttttttgtatcgtCAGAATATTTGGTGGTATTAGTTCTGGCCGATTTTCACAATAAATTAGATTAATTCGAATTAAAGTTTTAATGTGATTGTTAAAATGGTAATCGCAATTTTTCGTCTTTACAtacagaccttttttttttttacctaaaatatGCGAAAACGCTACTCAATTCTTAAATGTTTGTCCTTCTTACCCTGGTTAGCGGCGCCTCCCACAGACAAGCGCacgcatattttctaaacaaagCAAGAAGCCAAACACTCCAAACGCAGCCAAACACAAACGTTCTGAACTCGTAGCTAAAAACTGTGGAAATATTACTTCAGCGGTGTGGAATTCATAATCCTAgcgtttctaaaaactgcagcgtcATCGCTGTACGGTGAGTATCCCCGATATTTTGTTAAACAATGAAGTGCGCTCctgtttcttttacattttaactttaGAGTCTTTATTTCAGTCAGAAACTCACGTTCTGAAGTTTAATCCACTGTCAACGCATGAGCCTGGAAACAATGTTCTGAATCACGGATCACTGACTTGTGAACCGATTCACTCAGTGGGTCGAtctgtgtgtaatacacctatataataatatttttagatgcacctgtaggtagatacactttgtagttctgtgtaattacagactagtaatgtatctgtttctctgtatactttattattattattattatcatcttcCTTCCACCCTATTCTTCAgtgctcaggaccccacaggatagaccacatGTATACAGAGATACAgtctataattataattattataattatagaaCTGTTAAGTGCTCCTATATTATCGTTTATGCTGATGAATTGACAgcgaggtggtcataatgttctgaAATATGActgtgtatgaatgaatgaatgaatgaatgaatgaatgaatagtgTCTATAAGTGCACTGATGTATGATCACTGCCTCCAAGTTTTGTAGAATTTGTCGCTTTTGACCACCAGAGGACGCCAAGCCACTGCATGCTGAGCTCTGCTGGGTCGTGCATGATGAGTTCAAGCTGAATTTGACcatcaacagcagttttatAAAGCGCTAGAGTGCATCTTCACATTGGGACAGATGTCAGACATGCCGTGTTTGTGaagaactttttattattattatttttattattattaatatcattatttattagtatccctttttgtacaggggttggacaatgaaactgaaacacctggttttagagcacaataattgattgtgttgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcatccacagttaatcctgttggatgtggttggtccttcttggtggtatgctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202021 True 1504 lncRNA 0.37 3 3980794 4091841

Neighbor

gene id symbol gene type direction distance location
pter pter coding upstream 298273 3678996 ~ 3682521 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding upstream 347926 3585245 ~ 3632868 (+)
LOC103030995 cables1,LOC108430174 coding upstream 620943 3295980 ~ 3359851 (+)
gata6 gata6 coding upstream 772876 3198785 ~ 3207918 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding upstream 841436 3028383 ~ 3139358 (+)
LOC103021386 NA coding downstream 29474 4121315 ~ 4123410 (+)
LOC111194481 LOC108433078 coding downstream 178176 4270017 ~ 4286199 (+)
LOC111194482 NA coding downstream 293018 4384859 ~ 4386588 (+)
LOC111194480 LOC108433077,LOC108280739 coding downstream 345027 4436868 ~ 4477488 (+)
LOC103045023 LOC108433075,LOC108280757 coding downstream 492472 4584313 ~ 4621712 (+)
LOC111194476 NA non-coding upstream 99519 3880132 ~ 3881275 (+)
G149195 NA non-coding upstream 211035 3756166 ~ 3769759 (+)
G149191 NA non-coding upstream 241222 3737361 ~ 3739572 (+)
G149175 NA non-coding upstream 254927 3701156 ~ 3725867 (+)
G149159 NA non-coding upstream 341840 3638075 ~ 3638954 (+)
G149247 NA non-coding downstream 9105 4100946 ~ 4102869 (+)
G149251 mcm6l,LOC107757789,LOC108280894,LOC108433082,LOC107600254 non-coding downstream 22330 4114171 ~ 4115546 (+)
G149260 NA non-coding downstream 79243 4171084 ~ 4226395 (+)
G149278 NA non-coding downstream 193087 4284928 ~ 4341467 (+)
G149302 NA non-coding downstream 405403 4497244 ~ 4812714 (+)
LOC103027938 NA other upstream 970728 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 1577440 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 1787069 2003599 ~ 2193725 (+)
G148599 NA other upstream 1866329 2112673 ~ 2114465 (+)
G148442 NA other upstream 2775394 1200285 ~ 1205400 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 35108 4126949 ~ 4131384 (+)
G149256 NA other downstream 67359 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 200642 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 413872 4505713 ~ 4512310 (+)
trnal-uaa_9 NA other downstream 432785 4524626 ~ 4524708 (+)

Expression


Co-expression Network