G149226


Basic Information

Item Value
gene id G149226
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3991810 ~ 4009735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU202026
ttttttttttttttttatctttcatagCTTTTATCAGAACATAATTTCAGCTGGAGGCGGAGCCATTTACGGTAAGAGTCTTCTAAGAGCTTTCTCTGCACAGAGTCCTCGGTTCAAATCCAGATGAGGCACCTAGTTTTGAGGCACCATATCCAATATCCATTAGCTTGTTAATGCAGCAAGTGTGCTCAGCTAACTCCTCCGGACGGTGGACAGAATGGTCTCACATTCCGGTATTAAGTATGATCCGTCAGGGGCAGTGGTGCGATTTAATGTGGGCGGGGTTTAGCTGTTGGGGACACATCACactataatacaaataatagtaTTGTGGTCATATGCTTCTGTAATAACCTCAATGtactggtgtaaaatggacttttgttgtagtaaaacatgataaagttcttccctttgatgaatagcacactaactttttaagttattaaagcctcgttttaaatgtcagggctctccggattctagcaaggaggtgtggagctactttgagctggataacggtggaaaaagttatttttcaggataaattatgccctgtatcacccagtctgaagggtgtttggacaaactaacatttctggatctcggaacgctgtgggagaacggaggtgtgatattcatcaaaggtaagaactttttatcatgttttactacaacaaaagtccattttacaccagagttctcctttaagatcaGGATCACCCAGCACCAGAGGTGAGAATAGGGGCCggacaatatatattaatattgcgatatattgcaGTATTTCACTATCATATCAatatgtggcatcaaatataTTCAGTAAATCAGATACTTTGATCAAAATAAAGATTATATTGCGACAATTTGATCCTACGATACTCggtatatcacaagacaattctctacggTGCTGTTATTGTTGCTGAAGACGATAAAATACTACTAAATGAGcccaggtttaccctattcaccTGATTATAgtagttatatattatataagtagTAGTTTCAGAAAGAAAGTTTGAGTTTTAGAGAGTTCACCATGCCTATAGGTCAATAAAAATGACTATTTGTTGCCACATATTGCAAACTAAAGCAATACGATATATCGCTATATCAATATTATTTTGTTCAACCCTACCATGGATACCGTGTTTGGAGGAAAATAAGGTTGATGGGAGTTTTCTGTACATCAAGCAATAACCTGTCCTGTAGTCCTCCTGAGCAGCTGTTCCTCAGGCGCAGCTCACTGAGACACTGAATTCTTACAGGCTGCATCCTGAAgatgttgagttttttttctctctctctctttaggttTGTTGGCCTGGTCGCTCCTCAGAGGTCCGGGAGTATTGGGTTATTTCAGCAGTTTAGGTACAGCCATGGCGGTCATGGTGGCGATAGTAGGGACGGTGATGTCTCTGAAGACCGGTGTGGAGTTTGTGGAGAAAGAAGGTTTACTCTGGCTCAGAGTTTCCACGATCATCTGCCTCATATCACGAGTAGCGTCGCCTCGAACGGCCAGCAAGGCCAGGATGTGCTCCTCCCTGTTTTGTGGGCAGAGAA
>TU202027
GATCACCTGACCAAGCTCTTCCTGGAGGCAGTGATTTGGTGCAGCAGGTGAGACTGATTAGTAATCTGGTGGAGCTTCACTCTGCTGGAGGGTAGTAGCTCTCCAGGAGGAGCAGAGTTCTTCAAATCCAGTCTTGAGGTCCACTGTCCTGCATGGTTTGCTTTTATCAGAACATAATTTCAGCTGGAGGCGGAGCCATTTACGgttTGTTGGCCTGGTCGCTCCTCAGAGGTCCGGGAGTATTGGGTTATTTCAGCAGTTTAGGTACAGCCATGGCGGTCATGGTGGCGATAGTAGGGACGGTGATGTCTCTGAAGACCGGTGTGGAGTTTGTGGAGAAAGAAGGTTTACTCTGGCTCAGAGTTTCCACGATCATCTGCCTCATATCACGAGTAGCGTCGCCTCGAACGGCCAGCAAGGCCAGGATGTGCTCCTCCCTGTTTTGTGGGCAGAGAAAGATTTAGtttagtaccagtcaaaggtttggacacaccttctt
>TU202028
GATCACCTGACCAAGCTCTTCCTGGAGGCAGTGATTTGGTGCAGCAGGTGAGACTGATTAGTAATCTGGTGGAGCTTCACTCTGCTGGAGGGTAGTAGCTCTCCAGGAGGAGCAGAGTTCTTCAAATCCAGTCTTGAGGTCCACTGTCCTGCATGGTTTGattcactctatctggataaaggagaggaaggtggatgatcacaaccatcaaaccaagcctgaactgctttaatttttgcaccaggagtaaagcagcataaagttatccaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202026 True 1575 lncRNA 0.41 2 3991810 4009692
TU202027 False 499 TUCP 0.51 3 4004918 4009735
TU202028 False 272 lncRNA 0.47 2 4004918 4005478

Neighbor

gene id symbol gene type direction distance location
pter pter coding upstream 309289 3678996 ~ 3682521 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding upstream 358942 3585245 ~ 3632868 (+)
LOC103030995 cables1,LOC108430174 coding upstream 631959 3295980 ~ 3359851 (+)
gata6 gata6 coding upstream 783892 3198785 ~ 3207918 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding upstream 852452 3028383 ~ 3139358 (+)
LOC103021386 NA coding downstream 111580 4121315 ~ 4123410 (+)
LOC111194481 LOC108433078 coding downstream 260282 4270017 ~ 4286199 (+)
LOC111194482 NA coding downstream 375124 4384859 ~ 4386588 (+)
LOC111194480 LOC108433077,LOC108280739 coding downstream 427133 4436868 ~ 4477488 (+)
LOC103045023 LOC108433075,LOC108280757 coding downstream 574578 4584313 ~ 4621712 (+)
LOC111194476 NA non-coding upstream 110535 3880132 ~ 3881275 (+)
G149195 NA non-coding upstream 222051 3756166 ~ 3769759 (+)
G149191 NA non-coding upstream 252238 3737361 ~ 3739572 (+)
G149175 NA non-coding upstream 265943 3701156 ~ 3725867 (+)
G149159 NA non-coding upstream 352856 3638075 ~ 3638954 (+)
G149239 NA non-coding downstream 21552 4031287 ~ 4033193 (+)
G149247 NA non-coding downstream 91211 4100946 ~ 4102869 (+)
G149251 mcm6l,LOC107757789,LOC108280894,LOC108433082,LOC107600254 non-coding downstream 104436 4114171 ~ 4115546 (+)
G149260 NA non-coding downstream 161349 4171084 ~ 4226395 (+)
G149278 NA non-coding downstream 275193 4284928 ~ 4341467 (+)
LOC103027938 NA other upstream 981744 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 1588456 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 1798085 2003599 ~ 2193725 (+)
G148599 NA other upstream 1877345 2112673 ~ 2114465 (+)
G148442 NA other upstream 2786410 1200285 ~ 1205400 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 117214 4126949 ~ 4131384 (+)
G149256 NA other downstream 149465 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 282748 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 495978 4505713 ~ 4512310 (+)
trnal-uaa_9 NA other downstream 514891 4524626 ~ 4524708 (+)

Expression


Co-expression Network