LOC103029581 (LOC108433065)


Basic Information

Item Value
gene id LOC103029581
gene name LOC108433065
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4505713 ~ 4512310 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU202206
agagagagagacagagagagagagagagagagagatttaaaggAATCTGGTCCAGTCTCTCAGTAACACATGGAATCTGCTGCTGAAGCCGAGAGGGATTAAGGACATGCTGCCGAGTAACCGCTAAAAGATAACCAGGGACCATGCTCACCGTGCCGTTTGAAGAGGCGGAGGCCGCGCGCGAGCTCCGATTCGGCGCCTCCAACACGGGATCAAAGGAGAccacagaggaggaggaggaagatgaagagGAGCTGGACGGGAGGAGAGGACCCCGccggagaagaggaggaggaggtgg
>XM_022678729.1
agagagatttaaaggAATCTGGTCCAGTCTCTCAGTAACACATGGAATCTGCTGCTGAAGCCGAGAGGGATTAAGGACATGCTGCCGAGTAACCGCTAAAAGATAACCAGGGACCATGCTCACCGTGCCGTTTGAAGAGGCGGAGGCCGCGCGCGAGCTCCGATTCGGCGCCTCCAACACGGGATCAAAGGAGAccacagaggaggaggaggaagatgaagagGAGCTGGACGGGAGGAGAGGACCCCGccggagaagaggaggaggaggtggaggaggagagggaggaggggggtCGTCCAGAGGCGGCACGGAGCGGTCGCGCGCCCGGCGCCAGGAGGCCAACGCGCGCGAGCGCTCGCGCATGCACGGCCTGAACGACGCGCTGGAGAGCCTGCGGCGCGTGGTGCCGTGCCACTCCAAGACGCAGAAGCTGTCCAAGATCGAGACACTGCGCCTGGCCAGGAACTACATCCGGGCGCTGTCCGAGACGTTGCGCGCGGGCACGCGGCCCGACCTGCTGGCGTTTGCGCGCACATTATGCGCGGGCCTCTCGCAGCCCACCACCAACCTGGTGGCGGGGTGCCTGCAGCTGAACGCCGCGCGCTTCCTCGCGGATCACGGCGGCGGGGGGATAGGGGAAGGAGAAGCGCAGTACGATGTGGCCTACGGGGCCACGCCCACCGGCCACGCCCACCACGCCGGCAGAAGTAGCAGTGTTGGAACCATGGACAGCGGCAAACCGCTCCGGTCCACATACGGGTACTGCTCCACGTCACCATACGAGCACGGCGGCGGGTACGAGTTGGGCGGCTGTGGCCCCCGGCTGGAGCCTCCCCTCAGCTACGACGGCATCTTCTCGTTCAGGACGCGCGAGCACGAGCACGCTGCCGCGGCGGCGGCCGCTGCTGCGGCGGCGCGCGCCAAAGACTCTCCGTACACTCACAGTGGCGCGCTCACGCACTTTCCCTACGAGCTCCACGTGCATCAGGCCTTCCAGAGCCAGGAGGAGCTCAACCAGAGCTACCACAGTTAGACCAGGAATTAGGACTCAGTACTAACATATCTATTCTTTGACCGTTCAAAATGAACGATTGAAAACAGAAATGTAGAACATTTGCTCAATAATCTCTTtgtacagaacattttttaaaagtgtgcAATGTTACAAGAAAACATATCAGTTAAAGACATTTATTTGATCATCAATCTAAAGAacaaatgttttaacattttaacaaacagttttgcaaaaaaaaaaggaattcaaAATCTGCAggatgtaaaataaatttaaaaagaaagaaaataaataattgtggaATATAGTCGCTGTCAAACCTTTTATGTTTAATCGTGCATCTTCAAAGAAGCaactttacatatatatatacaatttttatAATTATGGAAAATTTATCTTATTGTTAACAATAATGAGCAACTCACATTCCCAGTGGTGAACAACACTGAAATGCATTTGTGTAAAATTGAGACACCCCATCTCAAATAAAATGACAGCGACgatattttccatttttcaaGTTTTAGCAGTTAAAAATTGACacctttttaatgttaaaaacgAAAGAAGTaagaatttgaaaaaaaagcttattactttattatttatttcccgAAAGCCGAATTATTTACGTAATTTATGTATGTCTTTGCTTTACAATGTTTATCTGTAAATAGTGTTTATTTATACGACCTGTGAATGCTCGCTATTACGGCCTAAACTGGGGTCAGTTTCTGGTCGTTTACCGGTGGTTTGGTTCTGAAAAGAAAATCCGAATTCAGTTTTAGACGAGTTGAGTTAAGAATTTATTCAGCTTTGCTAAAATCTGGATCCTTTCAGcaataaaaggaataaaaacaGGAGCTATGCAACAAAAATGAAGCTGCTCACGTGAATGGATTTGATTTGAGCTcgtgtaaatataaatatagctgGATTGTTTCAAACGGGGTTTGGGTGggtttgaaaaaaaatcacacattaaAGTGTAAAAACTGGTACAATCACGAATGTTGTGAATAAAGTGAAACAGTGGAGGAGTTTCTTCTTTATCTGAGtctgaatgagagagagagagagagagagagagagagactgcgaCTATAAAAT

Function

NR:

description
PREDICTED: neurogenic differentiation factor 6-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202206 False 301 TUCP 0.57 3 4505713 4510449
XM_022678729.1 True 2134 mRNA 0.48 2 4508636 4512310

Neighbor

gene id symbol gene type direction distance location
LOC111194480 LOC108433077,LOC108280739 coding upstream 28225 4436868 ~ 4477488 (+)
LOC111194482 NA coding upstream 119125 4384859 ~ 4386588 (+)
LOC111194481 LOC108433078 coding upstream 219514 4270017 ~ 4286199 (+)
LOC103021386 NA coding upstream 382303 4121315 ~ 4123410 (+)
LOC103047776 NA coding upstream 507654 3953403 ~ 3998059 (+)
LOC103045023 LOC108433075,LOC108280757 coding downstream 72003 4584313 ~ 4621712 (+)
trnal-uaa_36 NA coding downstream 330159 4842469 ~ 4842550 (+)
trnal-uaa_37 NA coding downstream 330349 4842659 ~ 4842741 (+)
trnal-uaa_38 NA coding downstream 330540 4842850 ~ 4842932 (+)
trnal-uaa_39 NA coding downstream 330730 4843040 ~ 4843122 (+)
G149278 NA non-coding upstream 164246 4284928 ~ 4341467 (+)
G149260 NA non-coding upstream 279318 4171084 ~ 4226395 (+)
G149251 mcm6l,LOC107757789,LOC108280894,LOC108433082,LOC107600254 non-coding upstream 390167 4114171 ~ 4115546 (+)
G149247 NA non-coding upstream 402844 4100946 ~ 4102869 (+)
G149239 NA non-coding upstream 472520 4031287 ~ 4033193 (+)
G149335 NA non-coding downstream 111520 4623830 ~ 4627706 (+)
G149340 NA non-coding downstream 206766 4719076 ~ 4771503 (+)
G149357 NA non-coding downstream 327805 4840115 ~ 4840341 (+)
G149366 LOC108410861 non-coding downstream 395107 4907417 ~ 4909831 (+)
G149571 NA non-coding downstream 418503 4930813 ~ 4932837 (+)
LOC111194484 LOC108433077 other upstream 119079 4292483 ~ 4386634 (+)
G149256 NA other upstream 345607 4159200 ~ 4160106 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other upstream 374329 4126949 ~ 4131384 (+)
G149226 NA other upstream 495978 3991810 ~ 4009735 (+)
LOC103027938 NA other upstream 1495647 2994206 ~ 3010066 (+)
trnal-uaa_9 NA other downstream 12316 4524626 ~ 4524708 (+)
trnal-uaa_10 NA other downstream 14759 4527069 ~ 4527149 (+)
trnal-uaa_12 NA other downstream 17400 4529710 ~ 4529792 (+)
trnal-uaa_13 NA other downstream 18124 4530434 ~ 4530516 (+)
trnal-uaa_14 NA other downstream 19066 4531376 ~ 4531458 (+)

Expression


Co-expression Network