G149617 (sbds,LOC102193797,LOC102210364)


Basic Information

Item Value
gene id G149617
gene name sbds,LOC102193797,LOC102210364
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5223649 ~ 5226340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU202637
TgctgttttgtgcttttatttgctttaacAGAGTAGTGAATATCCTTCATGGCTCTCTCTATCAGGTTCACTGTATACGGCCGCTTGGTTTCTGGATTCACACATTTCTCTGCCACTATTGTGGCAATGTCTCGGAACATCTGCTCCAGCTGAGTCTGTCGCTCTTTATCAGACACCTGAAGCTCTCCTTTTGCTAAAAtCTGTTTGCATATTTCTGTTAAATCATCTGTTCCAAAGGATTTCGCCAGGTCTTCCTTTTTTGCCACTTGGCCCTTTGAAACGTTCATaaacactgtgtgtgtctgaagTACTTCATCCAGATCCTTCTCTGCTCCCGCTCTCCAGCTCATGACTTTATTCTTATAACAGGCGATTTCGAAGCGCTTGCCTCCTTTCTTCATCCTCACCACGGCCACGTTAGTGAGCCGGATCTGGTTAGTGGGAGTAAATATGGACATGTCTGCGCTCCTCTGATCAGCCCCGCTCCGCCTCGCTTCTTCTCAGCACCTGCTCTCCCTCCGCTGGAGCTGCGCGGTTCACACTGCAGCGCTGCTGCGCCCC

Function

symbol description
sbds Acts upstream of or within exocrine pancreas development; granulocyte differentiation; and ribosome biogenesis. Is expressed in gut; liver; pancreas; and pharyngeal arch 3-7. Used to study Shwachman-Diamond syndrome. Human ortholog(s) of this gene implicated in Shwachman-Diamond syndrome and aplastic anemia. Orthologous to human SBDS (SBDS ribosome maturation factor).

NR:

description
PREDICTED: ribosome maturation protein SBDS

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202637 True 561 lncRNA 0.49 3 5223649 5226340

Neighbor

gene id symbol gene type direction distance location
LOC111194493 NA coding upstream 2515 5217173 ~ 5221134 (+)
LOC103032540 cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975 coding upstream 6563 5215285 ~ 5217086 (+)
LOC103032228 NA coding upstream 11874 5210309 ~ 5211775 (+)
LOC111194492 NA coding upstream 16590 5204293 ~ 5207059 (+)
LOC111194610 NA coding upstream 19649 5201640 ~ 5204000 (+)
LOC111194496 taf15,LOC107103138 coding downstream 36001 5262341 ~ 5273102 (+)
mmp28 mmp28 coding downstream 47575 5273915 ~ 5304919 (+)
LOC103043150 LOC108424020,LOC108280635 coding downstream 107531 5333871 ~ 5344070 (+)
rsrc1 rsrc1,LOC108424082 coding downstream 465495 5691835 ~ 5912829 (+)
mlf1 NA coding downstream 689259 5915599 ~ 5932823 (+)
G149574 NA non-coding upstream 185855 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 289415 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 290812 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 313818 4907417 ~ 4909831 (+)
G149357 NA non-coding upstream 383308 4840115 ~ 4840341 (+)
G149635 NA non-coding downstream 118504 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 146669 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 199552 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 560585 5786925 ~ 5816467 (+)
G149760 NA non-coding downstream 723511 5949851 ~ 5950341 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 23664 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 108933 5111324 ~ 5114716 (+)
G149595 NA other upstream 121291 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 458804 4684608 ~ 4764845 (+)
trnal-uaa_35 NA other upstream 663634 4559933 ~ 4560015 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other downstream 1578 5227918 ~ 5258861 (+)
G149754 NA other downstream 498929 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1356706 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1709001 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 2022825 7249165 ~ 7251366 (+)

Expression


Co-expression Network