G149644


Basic Information

Item Value
gene id G149644
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5373009 ~ 5375260 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU202670
CCTATCCATGCATTCATACAAACAGTGACTCATCCATTCAATTAAATAgaattatattagatattattataatacaggTTCATTTCATTGTCAGAATGTATACATATTTTCAGAAATATATGCTGAATACATTGCATTCAGCTATTCCCAGcattgaatcatttacagcatactgtatagtgtatagtgacATTTACTGTAACTtgttttatatactatatatcatattgtattcATATTTATGGCACATCATTACATCTCAACACGCTTACAATGCTAATGATATGAGGCATAGCATTAGCCATGCAAAGAAATatagtatttttaataataaactacttctgcacttttaatgttttcaatgccttgttttaaatgtcagggtccTCAGAATACTACCAATTAATTCTGGATCTATTTTGAGCTTGTCAATAGTGTAAAAAGAGCCATTTCTTGCCAatactatgcccctatcactagcattgtaagcttgttgggagcatcggctaaaagctctTTATTTCAGAATGCTCAGgatgaatggaggtgggctatttggcaaaagtttgcacacattatcatgtttcactacaacccaagtccactTCACACTggacttctcctttaatgtCTTACTACTGTACATTATTACCCAGCCAgcagcactgaggagagttctAGTTCTAGTTCTAATTCTATTTCACAGTGAAGGATGAGAAcactttaaacatttatattttctttacaaATTTACcgatttaccaccctgttattttgccttAGAATCAAACAAGCGCattttcttgtaaaaaaaaatatatatatatatctggtctgcttttattggctggttcagGTTCTAGCCTAACCCAGACCTTACTAAGAATTCTCATTATGCATCTATGCTAAAGTAAATCCAGTTTTCCATTCAAGCAGTCATTCTATAATCACTGCTGCATGAAAACTAATCTGATCCTGAAGCACCTGCAACTGAACTGTAAAGACATTCATTCTCACTCTATAACTTGAGACTAGCATGCTGTCTCAACTTTCAAAtcaagagagtgagagggggGTGTAGTGAACTGGTAATAGAGAGGGGACAGGGTGGTCAAGTGGCTTTGTGAACACTagaacacacaattacacagtttcaatacagtgtacagtatttGTGCACAGCAAAACCCACAGCAGTTCAAACCAAgttcaaaccaaacaaacattatGCAGCTGAATTAATTTATGAACACGGCTGTCAGACTTTAAATGCATACAGTGCAGTATGTGCTCGGCCTGTGATATCATACCTCAGTAAGAATAAAATCAGTTCTGTTCGCTTGCTATTAGAGATAATAAACCGGTTAAACTGGAAAGACAACTACACACTGACCttatatgtatacatttatatacagctctggaaaaataagagaccacctaaaaatcatgagtttctttgattttaccaaattgaaaacctctggaatttaatcaagaggaagatggatgatcacaagccatcaaaccaactgaactgcttgaatttttgcaccaggagtggcataaagttatccaaaagcagtgtgtaagactggtggagaacacgccaagatgcatgaaaactgtgattaaaaatttgcattatttgtggtctgaaatttctgcatcttttttgttattttagccattcttattttctgcaaataaatgctctaaatgacaatatttttatttggattttgggagaaattttgtctgtagtttatagaataaaacaacaatgtacaaacatatagctatacatagcaaaatcagagaaactgattcagaatctgaagtggtcttttcattttttccagagctgtatatatgtaactTTGCAGGGATGTTCTTAGAAGCATACTGATGCCattcattacaatattttgtccactCCTCTTTTAGAAATACTACTGCAttcaatataaaagaaaaaaaaaacatattaagaactgctgctttaatcatttttgctgacctcaatattgcccattttttttaacttaagaGACCAATAATGTGAATGACCTAGtatgtttttaaatagtgtttttacattttatttatttatgatgctGGTTGAGAAAATCCAAAGAGTCTGTTGAGGGTGTATCTGTTGGTTTTGTCCAACATATCAACATATAATCAACATGTGTTATTTTACAACTTTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202670 True 2215 lncRNA 0.34 2 5373009 5375260

Neighbor

gene id symbol gene type direction distance location
LOC103043150 LOC108424020,LOC108280635 coding upstream 28939 5333871 ~ 5344070 (+)
mmp28 mmp28 coding upstream 68090 5273915 ~ 5304919 (+)
LOC111194496 taf15,LOC107103138 coding upstream 99907 5262341 ~ 5273102 (+)
LOC111194493 NA coding upstream 151875 5217173 ~ 5221134 (+)
LOC103032540 cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975 coding upstream 155923 5215285 ~ 5217086 (+)
rsrc1 rsrc1,LOC108424082 coding downstream 316575 5691835 ~ 5912829 (+)
mlf1 NA coding downstream 540339 5915599 ~ 5932823 (+)
gfm1 gfm1 coding downstream 559928 5935188 ~ 5949403 (+)
LOC111194497 NA coding downstream 589516 5964776 ~ 5965375 (+)
mfsd1 mfsd1,LOC106580941 coding downstream 607150 5982410 ~ 6002460 (+)
G149635 NA non-coding upstream 27575 5344844 ~ 5345434 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding upstream 146669 5223649 ~ 5226340 (+)
G149574 NA non-coding upstream 335215 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 438775 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 440172 4930813 ~ 4932837 (+)
G149652 NA non-coding downstream 50632 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 411665 5786925 ~ 5816467 (+)
G149760 NA non-coding downstream 574591 5949851 ~ 5950341 (+)
G149766 NA non-coding downstream 579145 5954405 ~ 5959940 (+)
G149768 NA non-coding downstream 590900 5966160 ~ 5966431 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 114148 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 173024 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 258293 5111324 ~ 5114716 (+)
G149595 NA other upstream 270651 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 608164 4684608 ~ 4764845 (+)
G149754 NA other downstream 350009 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1207786 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1560081 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 1873905 7249165 ~ 7251366 (+)
G150099 NA other downstream 2394424 7769684 ~ 7805254 (+)

Expression


Co-expression Network