G149754


Basic Information

Item Value
gene id G149754
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5725269 ~ 5727420 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU202835
tacacacacacacacacacacggaaaaTGGAAACGGCCGCTTCCAGCGCTTCCAGCGGACCCAGCGCTTCCAGCGGACCCAGCGCTTCCAGCGGACACTCGCTATACTTGAACGGCAGCGAGGTGCAGTATCCACCGCACGTCAAATCAGCAAACGCCAGGAAAATATTCAAAACAAAAATCCTGTCTGACAACAGCTTACACAACTTTCAAAACTGCTTTCAAAATATGAAGAAATCTGCTGcatcaaaaagaaaaactacagATTCACAGAGAACACCAGTGAACAACACTGTACACAGATCTGTACACAGCCCTACAACACCACGAGCACAGCCGGAGCTCACACCTAAACTGGCCTGCAGCATCAGGACTCTGAGAGAAGGGCTATCTATATTGGAACAGGAGTTTACTCATTTTAAAGAGAGAATCCTGTCCTGCCCTCCTCaggaaaacaacaacagcagcaaacCAGCAGGAGAACTTTACACTGAAGTTCTACAACATAAGAATGAGATCCGGGAACTACATCAGGCCATGAGAGAACTGGAAGAGGATAATCAGAATCTGAGGACAGTTTTACGGAGAATAACAGAGGAACTAAACACAATCACTCAACAGCTCAGCACTCCAGCACAGATACCCCAACACAGCCAGACAAGCACCAGAGAAAACTGCACCAGGTCCACTAACATTACCTCTCCCACCTCCTCACCCCCACGCCCTACACTACCCTCTCCTCATACCATACCTCAACCTACCCCaccaatacaaacacacaca
>TU202838
tacacacacacacacacacacggaaaaTGGAAACGGCCGCTTCCAGCGCTTCCAGCGGACCCAGCGCTTCCAGCGGACCCAGCGCTTCCAGCGGACACTCGCTATACTTGAACGGCAGCGAGGTGCAGTATCCACCGCACGTCAAATCAGCAAACGCCAGGAAAATATTCAAAACAAAAATCCTGTCTGACAACAGCTTACACAACTTTCAAAACTGCTTTCAAAATATGAAGAAATCTGCTGcatcaaaaagaaaaactacagATTCACAGAGAACACCAGTGAACAACACTGTACACAGATCTGTACACAGCCCTACAACACCACGAGCACAGCCGGAGCTCACACCTAAACTGGCCTGCAGCATCAGGACTCTGAGAGAAGGGCTATCTATATTGGAACAGGAGTTTACTCATTTTAAAGAGAGAATCCTGTCCTGCCCTCCTCaggaaaacaacaacagcagcaaacCAGCAGGAGAACTTTACACTGAAGTTCTACAACATAAGAATGAGATCCGGGAACTACATCAGGCCATGAGAGAACTGGAAGAGGATAATCAGAATCTGAGGACAGTTTTACGGAGAATAACAGAGGAACTAAACACAATCACTCAACAGCTCAGCACTCCAGCACAGATACCCCAACACAGCCAGACAAGCACCAGAGAAAACTGCACCAGGTCCACTAACATTACCTCTCCCACCTCCTCACCCCCACGCCCTACACTACCCTCTCCTCATACCATACCTCAACCTACCCCaccaatacaaacacacaca

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU202835 True 782 TUCP 0.48 3 5725269 5727420
TU202838 False 782 TUCP 0.48 2 5725269 5727420

Neighbor

gene id symbol gene type direction distance location
LOC103043150 LOC108424020,LOC108280635 coding upstream 381199 5333871 ~ 5344070 (+)
mmp28 mmp28 coding upstream 420350 5273915 ~ 5304919 (+)
LOC111194496 taf15,LOC107103138 coding upstream 452167 5262341 ~ 5273102 (+)
LOC111194493 NA coding upstream 504135 5217173 ~ 5221134 (+)
LOC103032540 cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975 coding upstream 508183 5215285 ~ 5217086 (+)
mlf1 NA coding downstream 188179 5915599 ~ 5932823 (+)
gfm1 gfm1 coding downstream 207768 5935188 ~ 5949403 (+)
LOC111194497 NA coding downstream 237356 5964776 ~ 5965375 (+)
mfsd1 mfsd1,LOC106580941 coding downstream 254990 5982410 ~ 6002460 (+)
LOC103045401 schip1,LOC108424074,LOC105909745,LOC108280660,LOC101468843,LOC107750091,LOC107551285,LOC102778146,LOC103369651,LOC106580942,LOC100701131,LOC107081925,LOC108240933,LOC103148079,LOC106612913,LOC102193686 coding downstream 278446 6005866 ~ 6500956 (+)
G149652 NA non-coding upstream 217216 5425892 ~ 5508053 (+)
G149644 NA non-coding upstream 350009 5373009 ~ 5375260 (+)
G149635 NA non-coding upstream 379835 5344844 ~ 5345434 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding upstream 498929 5223649 ~ 5226340 (+)
G149574 NA non-coding upstream 687475 4962090 ~ 5037794 (+)
G149757 NA non-coding downstream 59505 5786925 ~ 5816467 (+)
G149760 NA non-coding downstream 222431 5949851 ~ 5950341 (+)
G149766 NA non-coding downstream 226985 5954405 ~ 5959940 (+)
G149768 NA non-coding downstream 238740 5966160 ~ 5966431 (+)
LOC111194498 NA non-coding downstream 242213 5969633 ~ 5973852 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 466408 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 525284 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 610553 5111324 ~ 5114716 (+)
G149595 NA other upstream 622911 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 960424 4684608 ~ 4764845 (+)
c17h3orf80 NA other downstream 855626 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1207921 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 1521745 7249165 ~ 7251366 (+)
G150099 NA other downstream 2042264 7769684 ~ 7805254 (+)
G150131 NA other downstream 2147220 7874640 ~ 7879301 (+)

Expression


Co-expression Network