c17h3orf80


Basic Information

Item Value
gene id c17h3orf80
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6583046 ~ 6586369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203048
GCACCGCACTGCTGCACGCCTGTAACCGGTGACTGCTTGCAGCCTCATGCCTGTCTCGTGCAGTGATGCTACAGAGCACGAGAGCATCAGCACGAGCAGCCCCGCAGGCAGACGGTGAGCGGAGCCCCGCGCAGCGCGGGCTCGGACCCGGACTCTGCAGTATGACCGGACGGTAAAAGGGAACGGTACGGGacgcatttttatttttttgtgtttttttcatttttgcctCCACGAGTTTCGTTGCAGCCCGGAGCGCGCTCATTCTTCGCGCTGTTCACCATGGGCTCGCGCCTTGCCGTGTTGGCGGCGCTCGCGCTGCGTGCATGCCAGGCGTCGCGCGACTGCGGCGATGTGTCCTGCGGCGAGCACGAGCGCTGCTGCGCGCGCGGCAACGG
>XM_022678786.1
TCTGACGTAGCCCCTCCTCGCGCTCTGCACGGGACGGGACGGGACCGCGCGAGAGGCAGAGGGTGCAGAGCATGCACCGCACTGCTGCACGCCTGTAACCGGTGACTGCTTGCAGCCTCATGCCTGTCTCGTGCAGTGATGCTACAGAGCACGAGAGCATCAGCACGAGCAGCCCCGCAGGCAGACGGTGAGCGGAGCCCCGCGCAGCGCGGGCTCGGACCCGGACTCTGCAGTATGACCGGACGGTAAAAGGGAACGGTACGGGacgcatttttatttttttgtgtttttttcatttttgcctCCACGAGTTTCGTTGCAGCCCGGAGCGCGCTCATTCTTCGCGCTGTTCACCATGGGCTCGCGCCTTGCCGTGTTGGCGGCGCTCGCGCTGCGTGCATGCCAGGCGTCGCGCGACTGCGGCGATGTGTCCTGCGGCGAGCACGAGCGCTGCTGCGCGCGCGGCAACGGCAGCACCAGCAATGGCAACGGGAGCAGCGGGGCGGCGGCGCGCGCCTTCCTGGACGGCGCCGGCTGGCTCGCGAGGAAGCTGTCGGGGGTCCTGatcctgctgctgctcttcGCCATGGGCTACTTCGTGCAGCGCGTGGTGTGTCCGCGGCCGCGCGGGCGGCGCGAGAGGGTGCGCGCGTCCCGGGACACCCTGTTGACGACATCGTCGCCGCCACCGCTCGAGCCCGGGACCGAGTTCATGTGGCCCGcgccgctgccgccgccgccCCCTCCCCGCCTGCCCGCTTACGACGAGGTGAAGCACCTGCCCACGTACGAGGAGAGCGTGCAGGAGgcggaggaggaagaggaggaggaggaagggcTCGGCGGCCGCCGCTCACAGGATAACCTGCTGGAGGCGGCGGGAGCGCAGCGGAGGCCCGCGGAGGACAGACGGACAGCCGCGCGACAAACCCGGGGGTCCCGCAACTCAGTGTGACAGACAGAGCTGAGAAGGGGGGGACACCAACTAACAAacatactaaatatataaacaaatatacagaCAAGCAGAACTGGAAAAAAGGCCTGGGAGAAAAACTCAACACTGGAACATTTACATAAAACGTCCTGGAACAAAAACTTGGAAAAAGTCATCAGTACAAAGTGGAAAAGGACTTGTACAAATTCACTTGCAATGGAAATCATAACATTTACAGATATTTGCATCCTCAAAGTATTGGAATGTATGACTGTTACCAACAAAAATGTgaactttacatttttactgaattttattttgtagtttaaaggtgtgtattttaactgttaaaaaagagaaaaaaaatcaagcactAAAACTATCAAAAGAAAAGAGTTTACATACTGCAAATGCATTTGCAGTGAAAATTAGCAGTGATGTAATTTACAATCTTTCTTTAAGATCTGTAAAATTCATTGAAAAGTCCAGCAGCAGCATTGTGTGTCAACAagctaaaattatgtttttagtaggttttattttctacatgaacatgatataatatttataacagTAACAATCTCCCAGGCATGACATAATATACATGACCCTTGTTGAAATACTGTTCATTtacatgtttacattttatatccTGAATGATTTTCATTTTGTGTTCAGCTTTCTATGTTTTTGAAAACAGAaaagaatgtaaaatttacAGCACTTTGACTGTGAACACACAGCTTTATTTTGCAAAGACAACAGGTTGCAGTGGGTTTAGTTTAGGTGAGATAACAGTATGCAAATAGCATTATGTGCTAAACTTTTGTATCACTGTGCAAAAATCTTCTTTTTCTATGCATCCTATCAGCTCATTGAAGCAGATAATAAAATCACTGGAATCAAAACACTTTTGTTCAATGAAGGTGGATGTGCAAGGCATGCACAAATTAATACACATGAATGGACTCCAGGTATTTTGGTGCATCTGGTGAGAAGAGGCAGAACAAGAAAGCATTACTTATTGCGGTTTGTTCGAGGTGCACCTGTGGAGCTGGCGATTGTTAACAGAGGTCTATAATATAATCAGGGGGAAACATGCAGTATAAACCAAAGGACAGTAAGCTCTTATTATTGTCCATTGTTCTGATTGTAGAAGCCAGGGCATTcgaatgtatttttgtataatgtgtaaacatatacagcttattggaaaaaataagagacaagataaaaatgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203048 False 398 lncRNA 0.64 1 6583119 6583516
XM_022678786.1 True 2178 mRNA 0.49 2 6583046 6586369

Neighbor

gene id symbol gene type direction distance location
trnat-agu_9 NA coding upstream 33821 6549152 ~ 6549225 (+)
trnat-agu_8 NA coding upstream 34217 6548756 ~ 6548829 (+)
trnat-agu_7 NA coding upstream 35299 6547674 ~ 6547747 (+)
trnat-agu_6 NA coding upstream 35619 6547354 ~ 6547427 (+)
trnat-agu_5 NA coding upstream 36026 6546947 ~ 6547020 (+)
smc4 smc4,LOC107720450,LOC107570344 coding downstream 113357 6699726 ~ 6725345 (+)
trnat-agu_10 NA coding downstream 148726 6735095 ~ 6735168 (+)
trnat-agu_11 NA coding downstream 151592 6737961 ~ 6738034 (+)
nmd3 nmd3 coding downstream 307959 6894328 ~ 6905641 (+)
LOC111194502 NA coding downstream 348761 6935130 ~ 6938983 (+)
G149800 NA non-coding upstream 118166 6463101 ~ 6464880 (+)
LOC111194498 NA non-coding upstream 609194 5969633 ~ 5973852 (+)
G149768 NA non-coding upstream 616615 5966160 ~ 5966431 (+)
G149766 NA non-coding upstream 623106 5954405 ~ 5959940 (+)
G149760 NA non-coding upstream 632705 5949851 ~ 5950341 (+)
G149934 NA non-coding downstream 155157 6741526 ~ 6745025 (+)
G149938 kpna4 non-coding downstream 166649 6753018 ~ 6763106 (+)
G149944 NA non-coding downstream 183595 6769964 ~ 6827772 (+)
G149952 NA non-coding downstream 218110 6804479 ~ 6807042 (+)
G149960 NA non-coding downstream 306947 6893316 ~ 6893651 (+)
G149754 NA other upstream 855626 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1324185 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1383061 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1468330 5111324 ~ 5114716 (+)
G149595 NA other upstream 1480688 5090982 ~ 5102358 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 348972 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 662796 7249165 ~ 7251366 (+)
G150099 NA other downstream 1183315 7769684 ~ 7805254 (+)
G150131 NA other downstream 1288271 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 2062461 8648830 ~ 8656708 (+)

Expression


Co-expression Network