CI01000012_05856793_05862577


Basic Information

Item Value
gene id CI01000012_05856793_05862577
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5856316 ~ 5862642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05856793_05862577.mRNA
TTATAAAGAGCATCTAGTATAGAAAAGAATTGTCGAGTTGCAAACTCTAGCATTCTTCACTCTCTGAGTGAGTAAAAACATGTAGATTTGACTGATGGAGTACATTTCTAATAGAAAGTTATTTAACTGAATTTCTCATATTAAAATTGTCCATTATGTCCGAATGCAATGAGACCTGAGAGTGAATGCGTGTTGACTTATGAACTGAGCTCAGATCTCTGTATCTGAGCCAGTACAGCAGCGACCACCAACACTTCCAGTCTTGGAAATCTGAATGAATATGAGCTTGGAACAGGACAAAGAAAAAGAGCAAAACAGTGCATGCAAATCCCAAGGCCATGTGCTTATCCATACCAGCTCAAAACACAAGGACTAATTCACACTGGAGAGTTTAAGACATAATATGGGACTGGATGTGATTACACCTATCAAAGCAAATGAACAGTGAACCTCTTTGTGGATCAAAGACTGCCAAAAATGAAGACAGCCAAAGATGTGTTTATATTTTTCCCAAAAAATAGTGAGCCATTAACCTCCGTCAACTGGATCAAGCGATTCATCAAAACATTCAACTTAAAAGAACGATTCATTCATGAAATGATCTTTATCTTTTTCCGTCCTGAGCCTGATCCTCAGTTCATCGCCAACCTGTCTAGCAAAGATACCTCTTACAAGGCTGTTTCTCAAGTTAAGTGTCAACGCACCATTATCGCTGATCAGCTCACCTACTCAAGTTTGCTTTTGCACATCTCTGTCAAAAAAACCTATTGCATTATCTTTGTGAGTCTCGTCTTCTGTTTTGTGACAGAAGACCAGACTGCACAAAGATCTAGTGCTGCTGACGTACCTCCTCCTCCAGTGGAATCTAACGAAGAATCCATCTATAATGTGCATACCATCCTGGACTCACAGAGATGGGGCGGCGGACTAGAATATCTCATGGATTGGGAAGGCTTTGGTCAAGATGAACGATCCTGGGTACCACACAACAACATCTTGGACCCTTCCCTACTAACAGAGTTCCATGCTAACCACCCTAGTCATCCTGCACCCAGAGATCTTCATCTTCTTCTGTCCGGAGCCTTATCTTCAGTTCATCGCCAACCTGACCAGCAAAGATACCTCTTACAAGGCTGTTTCTCAAGTTAAGTGTCAACGCACCATTATCGCTGATCAGCTCCCCTGCTCAAGTTTGCTTTTGCACATCTCTACCA

Function

NR:

description
pol polyprotein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05856793_05862577.mRNA True 1214 mRNA 0.42 5 5856316 5862642

Neighbor

gene id symbol gene type direction distance location
CI01000012_05748899_05754466 ERLEC1 coding upstream 101062 5748899 ~ 5755254 (+)
CI01000012_05708007_05735678 MAP3K4 coding upstream 120331 5708007 ~ 5735985 (+)
CI01000012_05659039_05669397 NA coding upstream 186732 5659039 ~ 5669584 (+)
CI01000012_05648602_05650699 MYCLA coding upstream 205119 5648602 ~ 5651197 (+)
CI01000012_05565127_05567009 NA coding upstream 289086 5564939 ~ 5567230 (+)
CI01000012_05909453_05916000 MEMO1 coding downstream 46811 5909453 ~ 5916174 (+)
CI01000012_05923216_05928055 SRD5A2B coding downstream 59743 5922385 ~ 5929186 (+)
CI01000012_05946986_05984551 SLX4IP coding downstream 84344 5946986 ~ 5985959 (+)
CI01000012_06156417_06175135 NA coding downstream 292205 6154847 ~ 6175521 (+)
CI01000012_06182472_06192196 NA coding downstream 318365 6181007 ~ 6192613 (+)
G71637 NA non-coding upstream 12762 5843064 ~ 5843554 (+)
G71623 NA non-coding upstream 41367 5813517 ~ 5816605 (+)
G71622 NA non-coding upstream 45089 5810037 ~ 5811227 (+)
G71619 NA non-coding upstream 49531 5806521 ~ 5806785 (+)
G71618 NA non-coding upstream 50253 5805801 ~ 5806063 (+)
G71668 NA non-coding downstream 58551 5921193 ~ 5921399 (+)
G72484 NA non-coding downstream 165052 6027694 ~ 6027911 (+)
G72499 NA non-coding downstream 194582 6057224 ~ 6057425 (+)
G72516 NA non-coding downstream 283555 6146197 ~ 6146540 (+)
G72548 NA non-coding downstream 322905 6185547 ~ 6185835 (+)
G71548 NA other upstream 294883 5550493 ~ 5561433 (+)
G71221 NA other upstream 315860 5538525 ~ 5540456 (+)
G71218 NA other upstream 317932 5535852 ~ 5538384 (+)
G71199 NA other upstream 439531 5413250 ~ 5416785 (+)
CI01000012_07806089_07811902 BEND3 other downstream 1943461 7805248 ~ 7811902 (+)
G73578 NA other downstream 2504164 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 4359313 10223697 ~ 10236276 (+)
G75533 NA other downstream 5282175 11144817 ~ 11145739 (+)

Expression


Co-expression Network