G149952


Basic Information

Item Value
gene id G149952
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6804479 ~ 6807042 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203097
CCTGCGTCCAGactagggctgccacaaacgattatttttatagtcgactaatcaccgattattttttatgattagtcgactaatcggatcatacgttaattgaatataaaacacagtttatcacaatagaatgcagctgctattatacaaccatcattagatttcagctatatgctaactaaaaataaaaacaattaaaatcatagttcattaaacctttaatgaaatatgcagcttgttgtaacagacaattattttactgtttagcataaagtgtaaacaactgtgtaaaataaggataaggcactggcatttatgaaacatctcaactgtgaggttgtttgaactattatgaaaaaaagtatattaataaaaaatgcctctctgtccagatattgtgtacattaccgtctctctgtcgcactcagtgtgtctttagtttctgcccgatCTTGTTTTTCTGCCAGTTCTTGGGctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203097 True 479 lncRNA 0.33 2 6804479 6807042

Neighbor

gene id symbol gene type direction distance location
trnat-agu_11 NA coding upstream 66445 6737961 ~ 6738034 (+)
trnat-agu_10 NA coding upstream 69311 6735095 ~ 6735168 (+)
smc4 smc4,LOC107720450,LOC107570344 coding upstream 79134 6699726 ~ 6725345 (+)
trnat-agu_9 NA coding upstream 255254 6549152 ~ 6549225 (+)
trnat-agu_8 NA coding upstream 255650 6548756 ~ 6548829 (+)
nmd3 nmd3 coding downstream 87286 6894328 ~ 6905641 (+)
LOC111194502 NA coding downstream 128088 6935130 ~ 6938983 (+)
LOC111194503 NA coding downstream 132017 6939059 ~ 6941197 (+)
LOC111194504 NA coding downstream 137447 6944489 ~ 6946968 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding downstream 709962 7517004 ~ 7540136 (+)
G149938 kpna4 non-coding upstream 41373 6753018 ~ 6763106 (+)
G149934 NA non-coding upstream 59454 6741526 ~ 6745025 (+)
G149800 NA non-coding upstream 339599 6463101 ~ 6464880 (+)
LOC111194498 NA non-coding upstream 830627 5969633 ~ 5973852 (+)
G149768 NA non-coding upstream 838048 5966160 ~ 5966431 (+)
G149960 NA non-coding downstream 86274 6893316 ~ 6893651 (+)
LOC111194505 NA non-coding downstream 445984 7253026 ~ 7254591 (+)
G150002 NA non-coding downstream 466163 7273205 ~ 7284336 (+)
G150015 cux1 non-coding downstream 566971 7374013 ~ 7383978 (+)
G150060 NA non-coding downstream 840581 7647623 ~ 7647886 (+)
c17h3orf80 NA other upstream 218110 6583046 ~ 6586369 (+)
G149754 NA other upstream 1077059 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1545618 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1604494 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1689763 5111324 ~ 5114716 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 128299 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 442123 7249165 ~ 7251366 (+)
G150099 NA other downstream 962642 7769684 ~ 7805254 (+)
G150131 NA other downstream 1067598 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1841788 8648830 ~ 8656708 (+)

Expression


Co-expression Network