G149984 (LOC108444119,LOC108444125,LOC108412201,LOC108416439)


Basic Information

Item Value
gene id G149984
gene name LOC108444119,LOC108444125,LOC108412201,LOC108416439
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6935341 ~ 6947936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203150
GCTCTAATTTGCCTCTACTGCCTCTGCAAGCGCAGGCAAGATGGCAGCTTCCATTTCGGCCATATTTTGGCTTTAAAACGCCTTAATGAGAGTAAATGGGGACCGTCCAGTCCATACTTTTATACAGTCTATAATCACAACCCAAACTCCACAACGCGCCAAGCAGCACATTTTTAGTTGCTGCGGAAGCACAGCTCATTtaggctcagctcagctcacctCAGGACTTGTTGTGCTACTAAGATATAAGGCAGTGTGAGGTTGGTGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatagTGTGTGGTGATGACTGGGATATGAGTGATGCTGCAGTGGTGTGtagagagctgggctgtggagaAGCTGTAGATGCACTGGGCAAATCTCACTTTGGATCAGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAGTTTACACTGAAGAAATGTCAAAGGAGAGGATGGGGTAAACATAACTGTAATCACTCTACAGATGCTGGAGTTATCTGTTcaggtaaaacactgtaaacaggGACTGTACATTATCTGCCATGTAGGCAAAGTGTACAGCACAtatgattttcctttttaacCCACCCTAAATCTTTGTTGATTGCCAAGGTAAATTGGTATGTTTAAACTGAGCAATCACCAAACTGTGCTGTACACTGGAATTCTCAACCAACAAttaatttactgatttttttttttttactgatttcatAATTTTGCTGATccatattaatttgtttaatgtaattcatagCTTTACTGAACTTATTTTGAATCCTTATACTCTCTTTAGTTTTTTCCAATGCATTTATGAATCATTCATTGTGCAATATTTAGCATCATCATGCTTAATCATTTATCATTACTGATAAAtaagctttctttttttcatggtAATTTTTAGGAGTCCTGCTGGTTAATGGCTCTCGCTGCTCTGGaagagtggaggttcttcatggTGAGAGCTGGttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgggagctgggctgtggttctcctgtggagattctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTTCTGGTAAGAGCTGCATGTTTGTGATTAATGTCATTAAGATTAGCTCAATGTTTATGTAAACTTTTTGTAATTCTGTCAAAAATGCAAATGTCTTGCTATTATTTCAGTTTTCAGCCACAATTCTACTTTACATCATTTATAGTGgtgaaaatacatgtttttttccattctttctCAATGTCTTGGTCTGTCTTACTCACTGTTGTACAGGCAGTGTGAGGTTGGTAGATGGTGACAGTCGCtgtgctgggagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTTCTGGTAAGAGCTGCATGTTTGTGATTAATGTCATTAAGATTAGCTCAATGTTTATGTAAACTTTTTGTAATTCTGTCAAAAATGCAAATGTCTTGCTATTATTTCAGTTTTCAGCCACAATTCTACTTTACATCATTTATAGTGgtgaaaatacatgtttttttccattctttctCAATGTCTTGGTCTGTCTTACTCACTGTTGTACAGGCAGTGTGAGGTTGGTAGATGGTGACAGTCGCtgtgctgggagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaaCCTCTAAATTTTCTCTTCAGTGCTGAAAGTGAGACTtagttaaactgttaaaataagaCTTGTTAAACCAATCTAAagttgttgccatgtgggtcagccagacctcttcctgtaccttttttttcttgtttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt
>TU203154
ttaaagttttttttaataatcagaaaaatatcagtatatctgtagggggcaaatacttctTCATGGCAATGTATGTGTGCAGGATTGCTTGAGATTTTTTGGGACTACAAGCTACACCTTGCTGTGCTTTTTACACTCATCTGGTCATGCTgggaacacattttaataaaaagtgtaaagtgtatcagaaaaaattacatttgtgagtgaaataataagatattttacattgaattacattacatttggcagatgcttttgtccaaagtgacttacaataatggTGTACATTTACTAataggagcctgttctgtccgAAAATCGCACTGAAAAATTGTTTTTGTCATTGCTGGAATAGTTCGGTGGGGTTAGAGaaaaagagcagtctggtgcAGCTTGAAGTTTCCTGTGCGCCCTGTTAGAATGCCTGGTGTTATTTGAAAATCACAACCAGACTGACTTTTAATTCTGTGCGTTGGTGTGAAATGAGGGGGTTTGCCGCTCAATTGAAACTCTCAATTGTTATTGCTGAGATCATTATTTTAGTAATGAGTTTAGTAGTATTGATTTGATTTTTGTAGTATTTATAGCATGTGTCTCCATTTCTAGGAGAGAAGAAACAGCTTGCATTTGAAAACCTTCAAAAATTCTTCTTATTTCCAAACCAGGGTCAGTGCTCAAGTACGAATATTTGACTACCACTCCATTCACTACTTGAATTACATGCCTATTAGGttgagaggaggagaggaaatcTGTTCTGGGAGGTTGGAGGTGTATCATAATGCTGAGTGGGGGTCTATATGTGCTGATCTGTGGGACATCAGGGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGGCCGGCGCTGAGTGCTAATAGAAGAGCTGTTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGATCCACACTGGCTGCTCCCACAGTGCTGGAGTCACCTGTGCAGACATATTTGTCACATTACCTTTTTCATCTGAAACAACTACAACTTACACCACAGtaccagcacagctaacagagaaaaagacagtCCCTCCTTCAAAAAATCCATCATCTAATTTTCCATACATCTATCCAGTGTCTCTCCTGGTTCTGGGATCTGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGGAAGTTTTATCTCTGAAGATCAGCATTCAGGATATGAGGACGTAGATGAGGAGCTTCTCTCAGGTAAGTTGACATATACTGAATGTGTGTTAGAATTTTTAATgcagaagaaaaaacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat
>TU203157
GCTCTAATTTGCCTCTACTGCCTCTGCAAGCGCAGGCAAGATGGCAGCTTCCATTTCGGCCATATTTTGGCTTTAAAACGCCTTAATGAGAGTAAATGGGGACCGTCCAGTCCATACTTTTATACAGTCTATAATCACAACCCAAACTCCACAACGCGCCAAGCAGCACATTTTTAGTTGCTGCGGAAGCACAGCTCATTtaggctcagctcagctcacctCAGGACTTGTTGTGCTACTAAGATATAAGGCAGTGTGAGGTTGGTGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatagTGTGTGGTGATGACTGGGATATGAGTGATGCTGCAGTGGTGTGtagagagctgggctgtggagaAGCTGTAGATGCACTGGGCAAATCTCACTTTGGATCAGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAGTTTACACTGAAGAAATGTCAAAGGAGAGGATGGGGTAAACATAACTGTAATCACTCTACAGATGCTGGAGTTATCTGTTcaggtaaaacactgtaaacaggGACTGTACCTGCCATGTAGGCAAAGTGTACAGCACAtatgattttcctttttaacCCACCCTAAATCCTTGTTGATTGCCAAGGTAAATTGGTATGTTTAAACTGAGCAATCACCAAACTGTGCTGTACACTGGAATTCTCAACCAACAAttaatttactgattttttttttttttttactgatttcatAATTTTGCTGATccatattaatttgtttaatgtaattcatagCTTTACTGAACTTATTTTGAATCCTTATACTCTCTTTAGTTTTTTCCAATGCATTTATGAATCATTCATTGTGCAATATTTAGCATCATCATGCTTAATCATTTATCATTACTGATAAAtaagctttctttttttcatggtAATTTTTAGGAGTCCTGCTGGTTAATGGCTCTCGCTGCTCTGGaagagtggaggttcttcatggTGAGAGCTGGttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgggagctgggctgtggttctcctgtggagattctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTTCTGGCAGTGTGAGGTTGGTAGATGGTGACAGTCGCtgtgctgggagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTTCTGGCAGTGTGAGGTTGGTAGATGGTGACAGTCGCtgtgctgggagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaaCCTCTAAATTTTCTCTTCAGTGCTGAAAGTGAGACTtagttaaactgttaaaataagaCTTGTTAAACCAATCTAAagttgttgccatgtgggtcagccagacctcttcctgtaccttttttttcttgtttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt

Function

NR:

description
PREDICTED: deleted in malignant brain tumors 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203150 True 2506 lncRNA 0.40 6 6935341 6942682
TU203154 False 1451 TUCP 0.38 6 6943665 6947936
TU203157 False 2090 lncRNA 0.42 6 6935341 6942682

Neighbor

gene id symbol gene type direction distance location
nmd3 nmd3 coding upstream 29700 6894328 ~ 6905641 (+)
trnat-agu_11 NA coding upstream 197307 6737961 ~ 6738034 (+)
trnat-agu_10 NA coding upstream 200173 6735095 ~ 6735168 (+)
smc4 smc4,LOC107720450,LOC107570344 coding upstream 209996 6699726 ~ 6725345 (+)
trnat-agu_9 NA coding upstream 386116 6549152 ~ 6549225 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding downstream 569068 7517004 ~ 7540136 (+)
srprb srprb coding downstream 658553 7606489 ~ 7611611 (+)
neu4 neu4 coding downstream 672661 7620597 ~ 7627540 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 874045 7821981 ~ 7837425 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 1043558 7991494 ~ 8017086 (+)
G149960 NA non-coding upstream 41690 6893316 ~ 6893651 (+)
G149944 NA non-coding upstream 107569 6769964 ~ 6827772 (+)
G149952 NA non-coding upstream 128299 6804479 ~ 6807042 (+)
G149938 kpna4 non-coding upstream 172235 6753018 ~ 6763106 (+)
G149934 NA non-coding upstream 190316 6741526 ~ 6745025 (+)
LOC111194505 NA non-coding downstream 305090 7253026 ~ 7254591 (+)
G150002 NA non-coding downstream 325269 7273205 ~ 7284336 (+)
G150015 cux1 non-coding downstream 426077 7374013 ~ 7383978 (+)
G150060 NA non-coding downstream 699687 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 706492 7654428 ~ 7659678 (+)
c17h3orf80 NA other upstream 348972 6583046 ~ 6586369 (+)
G149754 NA other upstream 1207921 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1676480 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1735356 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1820625 5111324 ~ 5114716 (+)
LOC111194506 NA other downstream 301229 7249165 ~ 7251366 (+)
G150099 NA other downstream 821748 7769684 ~ 7805254 (+)
G150131 NA other downstream 926704 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1700894 8648830 ~ 8656708 (+)
G150579 NA other downstream 2607723 9555659 ~ 9567097 (+)

Expression


Co-expression Network