LOC111194506


Basic Information

Item Value
gene id LOC111194506
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7249165 ~ 7251366 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203172
CTCCACTCCACTGAATCAGTAGCCACAAGAAAGACGTCCTTTTCTCCGGGAGCTGCATGGGGACTGCAGGAGTCCAAAGTCTCGCTGTGTTTTATGGGGAACAGTTATTAATATTGGGTCAAATAATCCAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCGCTGCTCTGTACTGTGTTTCCCTTTTACTCTGTTTTCATTTAAAGCCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGAGTAGATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGCCCAGTTCCAAAAGACACAAcat
>XR_002651109.1
GATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAAcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203172 True 343 lncRNA 0.50 2 7249165 7251366
XR_002651109.1 False 129 ncRNA 0.45 3 7249449 7251366

Neighbor

gene id symbol gene type direction distance location
LOC111194504 NA coding upstream 302197 6944489 ~ 6946968 (+)
LOC111194503 NA coding upstream 307968 6939059 ~ 6941197 (+)
LOC111194502 NA coding upstream 310182 6935130 ~ 6938983 (+)
nmd3 nmd3 coding upstream 343524 6894328 ~ 6905641 (+)
trnat-agu_11 NA coding upstream 511131 6737961 ~ 6738034 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding downstream 265638 7517004 ~ 7540136 (+)
srprb srprb coding downstream 355123 7606489 ~ 7611611 (+)
neu4 neu4 coding downstream 369231 7620597 ~ 7627540 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 570615 7821981 ~ 7837425 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 740128 7991494 ~ 8017086 (+)
G149960 NA non-coding upstream 355514 6893316 ~ 6893651 (+)
G149944 NA non-coding upstream 421393 6769964 ~ 6827772 (+)
G149952 NA non-coding upstream 442123 6804479 ~ 6807042 (+)
G149938 kpna4 non-coding upstream 486059 6753018 ~ 6763106 (+)
G149934 NA non-coding upstream 504140 6741526 ~ 6745025 (+)
LOC111194505 NA non-coding downstream 1660 7253026 ~ 7254591 (+)
G150002 NA non-coding downstream 21839 7273205 ~ 7284336 (+)
G150015 cux1 non-coding downstream 122647 7374013 ~ 7383978 (+)
G150060 NA non-coding downstream 396257 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 403062 7654428 ~ 7659678 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 301229 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 662796 6583046 ~ 6586369 (+)
G149754 NA other upstream 1521745 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1990304 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 2049180 5196141 ~ 5199985 (+)
G150099 NA other downstream 518318 7769684 ~ 7805254 (+)
G150131 NA other downstream 623274 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1397464 8648830 ~ 8656708 (+)
G150579 NA other downstream 2304293 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 2599852 9851218 ~ 9852854 (+)

Expression


Co-expression Network